I have the same problem after upgrading karmic to lucid but only when I
use my bluetooth mouse.  If I boot with my wired mouse, I never have
focus problems; when I work from home and use my wireless bluetooth
mouse, the problem recurs without fail.  I haven't yet experimented with
using my touchpad/touchstick and not my bluetooth mouse.

Other difference between home (focus problems and bluetooth mouse) v.
work (works with wired mouse)  is that I use two external monitors at
work and just my Dell 6500 laptop display at home.  I have an NVidia
Quadro NVS 160M graphics adapter and am using driver version 195.36.24.
My X is version 1.7.6 from x.org.

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Focus gets stuck to a window - impossible to select other windows
https://bugs.launchpad.net/bugs/362359
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