lumns of (count,
row_id, column_id).
It works at small scale but gets unstable as I scale up. Is there a way to
profile this function in a spark session or am I limited to profiling on
pandas data frames without spark?
--
*Patrick McCarthy *
Senior Data Scientist, Machine Learning Engine
ocumentation linked above for further help.
>
> Original error was: No module named 'numpy.core._multiarray_umath'
>
>
>
> Kind Regards,
> Sachit Murarka
>
>
> On Thu, Dec 17, 2020 at 9:24 PM Patrick McCarthy
> wrote:
>
>> I'm not very fami
running code in a local machine that is single node machine.
>
> Getting into logs, it looked like the host is killed. This is happening
> very frequently an I am unable to find the reason of this.
>
> Could low memory be the reason?
>
> On Fri, 18 Dec 2020, 00:11 Patrick
the
> system, program starts running fine.
> This error goes away on
>
> On Thu, 17 Dec 2020, 23:50 Patrick McCarthy,
> wrote:
>
>> my-domain.com/192.168.166.8:63534 probably isn't a valid address on your
>> network, is it?
>>
>> On Thu, Dec 17, 2020
ath/to/venv/bin/python3 --conf
> spark.pyspark.driver.python=/path/to/venv/bin/python3
>
> This did not help too..
>
> Kind Regards,
> Sachit Murarka
>
--
*Patrick McCarthy *
Senior Data Scientist, Machine Learning Engineering
Dstillery
470 Park Ave South, 17th Floor, NYC 10016
gt; )
>
> Are there other Spark patterns that I should attempt in order to achieve
> my end goal of a vector of attributes for every entity?
>
> Thanks, Daniel
>
--
*Patrick McCarthy *
Senior Data Scientist, Machine Learning Engineering
Dstillery
470 Park Ave South, 17th Floor, NYC 10016
rol some of the
> performance features, for example things like caching/evicting etc.
>
>
>
>
>
> Any advice on this is much appreciated.
>
>
>
>
>
> Thanks,
>
> -Manu
>
>
>
--
*Patrick McCarthy *
Senior Data Scientist, Machine Learning Engineering
Dstillery
470 Park Ave South, 17th Floor, NYC 10016
f function.
> apart from udf,is there any way to achieved it.
>
>
> Thanks
>
>
>
> --
> Sent from: http://apache-spark-user-list.1001560.n3.nabble.com/
>
> -----
> To unsubscribe e-mail: user-unsubscr...@spark
al client.
>
> ps.I was avoiding UDFs for now because I'm still on Spark 2.4 and the
> python udfs I tried had very bad performance, but I will give it a try in
> this case. It can't be worse.
> Thanks again!
>
> Em seg., 3 de ago. de 2020 às 10:53, Patrick McCarthy
> To unsubscribe e-mail: user-unsubscr...@spark.apache.org
>
>
--
*Patrick McCarthy *
Senior Data Scientist, Machine Learning Engineering
Dstillery
470 Park Ave South, 17th Floor, NYC 10016
; > Best regards
>> > Mukhtaj
>> >
>> >
>> >
>> >
>>
>> -
>> To unsubscribe e-mail: user-unsubscr...@spark.apache.org
>>
>>
--
*Patrick McCarthy *
Senior Data Scientist, Machine Learning Engineering
Dstillery
470 Park Ave South, 17th Floor, NYC 10016
on/pyspark/sql/session.py",
line 191, in getOrCreate
session._jsparkSession.sessionState().conf().setConfString(key, value)
File
"/home/pmccarthy/custom-spark-3/python/lib/py4j-src.zip/py4j/java_gateway.py",
line 1305, in __call__
File "/home/pmccarthy/custom-spark-3/p
afford having 50 GB on driver memory. In general, what
> is the best practice to read large JSON file like 50 GB?
>
> Thanks
>
--
*Patrick McCarthy *
Senior Data Scientist, Machine Learning Engineering
Dstillery
470 Park Ave South, 17th Floor, NYC 10016
has binary code? Below is am
>>> example:
>>>
>>> def do_something(p):
>>> ...
>>>
>>> rdd = sc.parallelize([
>>> {"x": 1, "y": 2},
>>> {"x": 2, "y": 3},
>>>
adcastStaging PARTITION (broadcastId =
> broadcastValue, brand = dummy)
>
> -^^^
> SELECT
> ocis_party_id AS partyId
> , target_mobile_no AS phoneNumber
> FROM tmp
>
> I
I'm not a software engineer by training and I hope that there's an existing
best practice for the problem I'm trying to solve. I'm using Spark 2.4.5,
Hadoop 2.7, Hive 1.2.
I have a large table (terabytes) from an external source (which is beyond
my control) where the data is stored in a key-value
the
>> employee or agent responsible for delivering it to the intended recipient,
>> you are hereby notified that any use, dissemination, distribution or
>> copying of this communication and/or its content is strictly prohibited. If
>> you are not the intended recipient, please
Hi List,
I'm looking for resources to learn about how to store data on disk for
later access.
For a while my team has been using Spark on top of our existing hdfs/Hive
cluster without much agency as far as what format is used to store the
data. I'd like to learn more about how to re-stage my data
9 at 11:44 AM Abhinesh Hada
wrote:
> Hi,
>
> I am trying to take union of 2 dataframes and then drop duplicate based on
> the value of a specific column. But, I want to make sure that while
> dropping duplicates, the rows from first data frame are kept.
>
> Example:
> df1
rieb Dhrubajyoti Hati <
>>>> dhruba.w...@gmail.com>:
>>>>
>>>>> No, i checked for that, hence written "brand new" jupyter notebook.
>>>>> Also the time taken by both are 30 mins and ~3hrs as i am reading a 500
>>>>>
from which both are executed are also the same and from same user.
>
> What i found is the the quantile values for median for one ran with
> jupyter was 1.3 mins and one ran with spark-submit was ~8.5 mins. I am not
> able to figure out why this is happening.
>
> Any one faced
*select
>>>> count(*) from ExtTable* via the Hive CLI, it successfully gives me the
>>>> expected count of records in the table.
>>>> However, when i fire the same query via sparkSQL, i get count = 0.
>>>>
>>>> I think the sparkSQL isn't able to descend into the subdirectories for
>>>> getting the data while hive is able to do so.
>>>> Are there any configurations needed to be set on the spark side so that
>>>> this works as it does via hive cli?
>>>> I am using Spark on YARN.
>>>>
>>>> Thanks,
>>>> Rishikesh
>>>>
>>>> Tags: subdirectories, subdirectory, recursive, recursion, hive external
>>>> table, orc, sparksql, yarn
>>>>
>>>
--
*Patrick McCarthy *
Senior Data Scientist, Machine Learning Engineering
Dstillery
470 Park Ave South, 17th Floor, NYC 10016
= spark.read.format("image").load(imageDir)
>>
>> Can you please help me with this?
>>
>> Nick
>>
>
--
*Patrick McCarthy *
Senior Data Scientist, Machine Learning Engineering
Dstillery
470 Park Ave South, 17th Floor, NYC 10016
, so precomputing our coefficients is not an option. This
> needs to be done on request.
>
>
>
> I've been looking at many compute solutions, but I'd consider Spark first
> due to the widespread use and community. I currently have my data loaded
> into Apache Hbase for a different scenario (random access of rows/columns).
> I’ve naively tired loading a dataframe from the CSV using a Spark instance
> hosted on AWS EMR, but getting the results for even a single correlation
> takes over 20 seconds.
>
>
>
> Thank you!
>
>
>
>
>
> --gautham
>
>
>
>
--
*Patrick McCarthy *
Senior Data Scientist, Machine Learning Engineering
Dstillery
470 Park Ave South, 17th Floor, NYC 10016
s(obj)
> ImportError: No module named feature.user.user_feature
>
> The script also run well in "sbin/start-master.sh sbin/start-slave.sh",but
> it has the same importError problem in "sbin/start-master.sh
> sbin/start-slaves.sh".The conf/slaves contents is
d getting back
>> an array.
>>
>>
>> Regards,
>> Gourav Sengupta
>>
>> On Mon, May 6, 2019 at 2:00 PM Patrick McCarthy
>> wrote:
>>
>>> Human time is considerably more expensive than computer time, so in that
>>> regard, yes :
our code and
> prove it?
>
> On Sun, May 5, 2019 at 9:24 PM Patrick McCarthy
> wrote:
>
>> I disagree that it's hype. Perhaps not 1:1 with pure scala
>> performance-wise, but for python-based data scientists or others with a lot
>> of python expertise it allows on
tried to package it according to this instructions, it
>> got distributed on the cluster however the same spark program that takes 5
>> mins without pandas UDF has started to take 25mins...
>>
>> Have you experienced anything like this? Also is Pyarrow 0.12 supported
>> w
but this directory doesn't
>> include all the packages to form a proper parcel for distribution.
>>
>> Any help is much appreciated!
>>
>> --
>> Regards,
>>
>> Rishi Shah
>>
>
>
> --
> Regards,
>
> Rishi Shah
>
--
*Patrick McCarthy *
Senior Data Scientist, Machine Learning Engineering
Dstillery
470 Park Ave South, 17th Floor, NYC 10016
sn't always need to do 1:1 mapping.
>
> On Thu, Jan 10, 2019, 7:53 AM Patrick McCarthy
>
>> I'm trying to implement an algorithm on the MNIST digits that runs like
>> so:
>>
>>
>>- for every pair of digits (0,1), (0,2), (0,3)... assign a 0/1 la
I'm trying to implement an algorithm on the MNIST digits that runs like so:
- for every pair of digits (0,1), (0,2), (0,3)... assign a 0/1 label to
the digits and build a LogisticRegression Classifier -- 45 in total
- Fit every classifier on the test set separately
- Aggregate the res
Untested, but something like the below should work:
from pyspark.sql import functions as F
from pyspark.sql import window as W
(record
.withColumn('ts_rank',
F.dense_rank().over(W.Window.orderBy('timestamp').partitionBy("id"))
.filter(F.col('ts_rank')==1)
.drop('ts_rank')
)
On Mon, Dec 17, 2018
I've never tried to run a stand-alone cluster alongside hadoop, but why not
run Spark as a yarn application? That way it can absolutely (in fact
preferably) use the distributed file system.
On Fri, Nov 9, 2018 at 5:04 PM, Arijit Tarafdar wrote:
> Hello All,
>
>
>
> We have a requirement to run P
You didn't say how you're zipping the dependencies, but I'm guessing you
either include .egg files or zipped up a virtualenv. In either case, the
extra C stuff that scipy and pandas rely upon doesn't get included.
An approach like this solved the last problem I had that seemed like this -
https://
It looks like for whatever reason your cluster isn't using the python you
distributed, or said distribution doesn't contain what you think.
I've used the following with success to deploy a conda environment to my
cluster at runtime:
https://henning.kropponline.de/2016/09/24/running-pyspark-with-co
I'm not 100% sure, but a naive repartition() seems to cause a shuffle. If
this is actually happening, it's just wasteful overhead. The ambition is to
say "divide the data into partitions, but make sure you don't move it in
doing so".
On Tue, Aug 28, 2018 at 2:06 PM
/in/sonalgoyal>
>
>
>
> On Tue, Aug 28, 2018 at 8:29 PM, Patrick McCarthy <
> pmccar...@dstillery.com.invalid> wrote:
>
>> Mostly I'm guessing that it adds efficiency to a job where partitioning
>> is required but shuffling is not.
>>
>> For exa
> by hostname prior to that or not. My question is, is there anything else
> that you would expect to gain, except for enforcing maybe a dataset that is
> already bucketed? Like you could enforce that data is where it is supposed
> to be, but what else would you avoid?
>
> Sent f
> by hostname prior to that or not. My question is, is there anything else
> that you would expect to gain, except for enforcing maybe a dataset that is
> already bucketed? Like you could enforce that data is where it is supposed
> to be, but what else would you avoid?
>
> Sent f
> by hostname prior to that or not. My question is, is there anything else
> that you would expect to gain, except for enforcing maybe a dataset that is
> already bucketed? Like you could enforce that data is where it is supposed
> to be, but what else would you avoid?
>
> Sent f
> by hostname prior to that or not. My question is, is there anything else
> that you would expect to gain, except for enforcing maybe a dataset that is
> already bucketed? Like you could enforce that data is where it is supposed
> to be, but what else would you avoid?
>
> Sent f
that it's totally balanced, then I'd hope
that I could save a lot of overhead with
foo = df.withColumn('randkey',F.floor(1000*F.rand())).repartition(5000,
'randkey','host').apply(udf)
On Tue, Aug 28, 2018 at 10:28 AM, Patrick McCarthy
wrote:
> Mostl
hostname prior to that or not. My question is, is there anything else
> that you would expect to gain, except for enforcing maybe a dataset that is
> already bucketed? Like you could enforce that data is where it is supposed
> to be, but what else would you avoid?
>
> Sent f
When debugging some behavior on my YARN cluster I wrote the following
PySpark UDF to figure out what host was operating on what row of data:
@F.udf(T.StringType())
def add_hostname(x):
import socket
return str(socket.gethostname())
It occurred to me that I could use this to enforce node
You didn't specify which API, but in pyspark you could do
import pyspark.sql.functions as F
df.groupBy('ID').agg(F.sort_array(F.collect_set('DETAILS')).alias('DETAILS')).show()
+---++
| ID| DETAILS|
+---++
| 1|[A1, A2, A3]|
| 3|[B2]|
| 2|[B1]|
+---+
sampling a fraction of the data? If the problem persists could
> you make a jira? At the very least a better exception would be nice.
>
> Bryan
>
> On Thu, Jul 19, 2018, 7:07 AM Patrick McCarthy
>
> wrote:
>
>> PySpark 2.3.1 on YARN, Python 3.6, PyArrow 0.8.
&
PySpark 2.3.1 on YARN, Python 3.6, PyArrow 0.8.
I'm trying to run a pandas UDF, but I seem to get nonsensical exceptions in
the last stage of the job regardless of my output type.
The problem I'm trying to solve:
I have a column of scalar values, and each value on the same row has a
sorted vecto
Arrays need to be a single type, I think you're looking for a Struct
column. See:
https://medium.com/@mrpowers/adding-structtype-columns-to-spark-dataframes-b44125409803
On Wed, Jul 11, 2018 at 6:37 AM, dimitris plakas
wrote:
> Hello everyone,
>
> I am new to Pyspark and i would like to ask if t
t;)))
> .groupBy("ID")
> .agg(collect_set(col("val")).name("collected_val"))
> .withColumn("collected_val",
> toVector(col("collected_val")).as[Row](Encoders.javaSerialization(classOf[Row])))
>
>
> at least works. The indices sti
I work with a lot of data in a long format, cases in which an ID column is
repeated, followed by a variable and a value column like so:
+---+-+---+
|ID | var | value |
+---+-+---+
| A | v1 | 1.0 |
| A | v2 | 2.0 |
| B | v1 | 1.5 |
| B | v3 | -1.0 |
+---+-+---+
I
I recently ran a query with the following form:
select a.*, b.*
from some_small_table a
inner join
(
select things from someother table
lateral view explode(s) ss as sss
where a_key is in (x,y,z)
) b
on a.key = b.key
where someothercriterion
On hive, this query took about five minutes. In S
I have a large dataset composed of scores for several thousand segments,
and the timestamps at which time those scores occurred. I'd like to apply
some techniques like reservoir sampling[1], where for every segment I
process records in order of their timestamps, generate a sample, and then
at inter
You can't select from an array like that, try instead using 'lateral view
explode' in the query for that element, or before the sql stage
(py)spark.sql.functions.explode.
On Mon, Jan 29, 2018 at 4:26 PM, Arnav kumar wrote:
> Hello Experts,
>
> I would need your advice in resolving the below issu
Last I heard of them a year or two ago, they basically repackage AWS
services behind their own API/service layer for convenience. There's
probably a value-add if you're not familiar with optimizing AWS, but if you
already have that expertise I don't expect they would add much extra
performance if a
sing OneVsRest with StreamingLogisticRegressionWithSGD
> ?
>
> Regards
> Sundeep
>
> On Thu, Jan 18, 2018 at 8:18 PM, Patrick McCarthy > wrote:
>
>> As a hack, you could perform a number of 1 vs. all classifiers and then
>> post-hoc select among the highest prediction probability to assign
As a hack, you could perform a number of 1 vs. all classifiers and then
post-hoc select among the highest prediction probability to assign class.
On Thu, Jan 18, 2018 at 12:17 AM, Sundeep Kumar Mehta wrote:
> Hi,
>
> I was looking for Logistic Regression with Multi Class classifier on
> Streamin
object) a
>
> If you want dynamic ip ranges; you need to dynamically construct structs
> based on the range values. Hope this helps.
>
>
> Thanks
>
> Sathish
>
> On Mon, Oct 2, 2017 at 9:01 AM Patrick McCarthy
> wrote:
>
>> Hello,
>>
>> I'm try
Hello,
I'm trying to map ARIN registry files into more explicit IP ranges. They
provide a number of IPs in the range (here it's 8192) and a starting IP,
and I'm trying to map it into all the included /24 subnets. For example,
Input:
array(['arin', 'US', 'ipv4', '23.239.160.0', 8192, 20131104.0,
You might benefit from watching this JIRA issue -
https://issues.apache.org/jira/browse/SPARK-19071
On Sun, Sep 3, 2017 at 5:50 PM, Timsina, Prem wrote:
> Is there a way to parallelize multiple ML algorithms in Spark. My use case
> is something like this:
>
> A) Run multiple machine learning alg
gt;
> On Sun, 16 Apr 2017 at 11:06 am, ayan guha wrote:
>
>> It does not look like scala vs python thing. How big is your audience
>> data store? Can it be broadcasted?
>>
>> What is the memory footprint you are seeing? At what point yarn is
>> killing? Depenedi
Hello,
I'm trying to build an ETL job which takes in 30-100gb of text data and
prepares it for SparkML. I don't speak Scala so I've been trying to
implement in PySpark on YARN, Spark 2.1.
Despite the transformations being fairly simple, the job always fails by
running out of executor memory.
The
Ahh
Makes sense - thanks for the help
Sent from my iPhone
On Jul 23, 2015, at 4:29 PM, Enno Shioji
mailto:eshi...@gmail.com>> wrote:
You need to pay a lot of money to get the full stream, so unless you are doing
that, it's the sample stream!
On Thu, Jul 23, 2015 at 9:26 PM, Patri
How can I tell if it's the sample stream or full stream ?
Thanks
Sent from my iPhone
On Jul 23, 2015, at 4:17 PM, Enno Shioji
mailto:eshi...@gmail.com>> wrote:
You are probably listening to the sample stream, and THEN filtering. This means
you listen to 1% of the twitter stream, and then looki
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