Have a look at the brat project, they provide a JS library which can
display annotations in a browser.
http://brat.nlplab.org/
HTH,
Jörn
On 12/03/2013 10:44 AM, Roberto Franchini wrote:
Hi to all,
I'm looking for an annotation viewer for the web.
We have a REST api that wraps ours nlp
On 12/03/2013 11:23 AM, Seid Muhie wrote:
And also WebAnnohttps://code.google.com/p/webanno/, which uses the brat
visualization but the server side is UIMA annotation (currntly for POS,
Named Entity, Coreference, Lemma and Dependency Parsing)
Well, they are just using the Brat JS component and
On 12/03/2013 12:28 PM, Roberto Franchini wrote:
On Tue, Dec 3, 2013 at 11:54 AM, Jörn Kottmannkottm...@gmail.com wrote:
On 12/03/2013 11:23 AM, Seid Muhie wrote:
And also WebAnnohttps://code.google.com/p/webanno/, which uses the brat
visualization but the server side is UIMA annotation
On 10/23/2013 01:02 AM, Paul J. Lucas wrote:
Assuming I can get past this, my primary goal is to use UIMA to perform NER, i.e.,
give it some text and get people places back. I couldn't find any examples
of this. Can this be done using UIMA? Example C++ code? Thanks.
You could try Apache
On 10/03/2013 03:57 PM, Marshall Schor wrote:
Later, it became clear that the Collection Reader and Cas Consumer were just
parameterizations of normal Analysis Engines, so they were replaced by those.
The older classes still work, though.
We should deprecate them and communicate this better to
Yes, you can use the sofa mapping, to map some view to the _InitialView.
Have a look here:
http://uima.apache.org/d/uimaj-2.4.0/tutorials_and_users_guides.html#ugr.tug.mvs.sofa_name_mapping
Jörn
On 04/03/2013 02:19 PM, Peter Klügl wrote:
Hi,
sorry for this beginner question:
It there a
The Apache UIMA page is here:
http://www.ohloh.net/p/7917
If anybody of the dev team is interested to join the project just ask
on ohloh to be added as a manager.
Jörn
On 02/06/2013 07:44 PM, Marshall Schor wrote:
There's a website, https://www.ohloh.net, that tracks various things about open
An easy way of using JCas inside eclipse is to use the eclipse buddy
policy to
enable the UIMA Runtime Plugin to load the classes from your plugin.
Thanks to Peter to pointing that out to me.
Jörn
On 09/22/2012 11:51 PM, Jörn Kottmann wrote:
Hello,
using JCas doesn't work here because
Hello,
using JCas doesn't work here because the UIMA Runtime doesn't import your
JCas class.
To get things working you can do two things:
- Do not use JCas, you can do all operations with the CAS API
- Fix the imports in the UIMA Runtime OSGI Manifest and
only use the modified bundle
HTH,
Hello,
not sure what you are doing. My best guess is that you use the eclipse
launch support.
If thats the case you probably miss the uimaj-runtime dependency. Try to
compile everything
with maven first, refresh all eclipse projects and start it again.
The maven build generates the
comments on proposed fix?
Eddie
On Wed, Jul 4, 2012 at 6:53 AM, Jörn Kottmann kottm...@gmail.com wrote:
Hi all,
are sofa mappings for CMs are supposed to work?
Jörn
Hello,
any suggestions how linking FSes together can be improved in the Cas Editor?
You always need to find the FSes or annotations first to link them
and that always requires a few clicks. It is easy to make this much faster
if there is dedicated view support for a specific labeling task.
You write a string to the CAS which contains a non-xml character.
This character cannot be serialized into XMI, and thats what this
exception is about.
Have a look at our documentation explaining the issue:
The error was linked to my delegate imports in the AAE,
one delegate was imported twice. It first worked, and when
I tried to scale it i got the error message in dd2spring.
After removing the duplicate import it worked.
The Reader is an AE which creates a new view, so its not
a CR.
Did you fix
I am running the 2.3.1 release version on my cluster.
Jörn
On 06/13/2012 01:02 PM, Jörn Kottmann wrote:
The error was linked to my delegate imports in the AAE,
one delegate was imported twice. It first worked, and when
I tried to scale it i got the error message in dd2spring.
After removing
Hello all,
I have an AAE which uses a Cas Multiplier to segment an input CAS into
a couple of CASes.
My pipeline is constructed like this:
ReaderAE
SegmentDetectionAE (just outputs segment annotations)
SegmentationCM (cuts based on the previously detected annotations)
WriterAE (should write
:
XPTY0004: A sequence of more than one item is not allowed as the
first argument of
string() (@key, @key)
After fixing it my delegates can be scaled as needed.
Jörn
On 06/11/2012 04:06 PM, Jörn Kottmann wrote:
Hello all,
I have an AAE which uses a Cas Multiplier to segment an input CAS
Hi all,
I have a database which contains XMIs and would like to process
these with UIMA-AS.
My pipeline looks like this:
Database Reader AE
Result Writer AE
I made an AAE composed out of the two AEs, the first gets a CAS with an
ID encoded into its sofa. It then fetches the XMI from the DB,
On 04/24/2012 01:25 AM, Nicolas Hernandez wrote:
I do not have tested type system inclusion with the CAS editor.
TypeSystem imports should work in 2.4.0. Lots of problems
where fixed for this version.
Jörn
Looks like you are using an old version. The 2.4.0 version works better.
I suggest that you try that one instead.
In this version it asks you to point it to a type system if none for the XMI
file can be found in the configured location (default is TypeSystem.xml
in the root of the project).
Yes, you can use Apache OpenNLP.
Its a very well written library for standard NLP tasks.
See here:
opennlp.apache.org
Hope this helps,
Jörn
On 04/14/2012 10:34 AM, Jeremy Villalobos wrote:
Hello:
I have studied the User's Guide on creating Annotators, testing them and
deploying them with a
On 04/12/2012 11:32 AM, Peter Thygesen wrote:
Strange. Still problems. I reduced the corpus files to 10 files. running
with RunAE still doesn't produce any events, but when I run it with UIMA
Analysis Engine configuration it works.
That sounds strange, because it should not make a difference
No, we added an eclipse launcher to start AEs, so that you do
not have to use some kind of script.
Jörn
On 03/23/2012 02:06 AM, Fitch, Britt wrote:
I assume you are running one of the scripts in the bin directory, if so, you
can add the java -Xmx param to where it gets called. If you look in
On 03/23/2012 12:34 AM, Peter Thygesen wrote:
Trying to build a token model with UIMA CAS editor. But I get out of memory
exception. The run configuration is a UIMA Analysis Engine configuration
and does not have a arguments tab (like plain java apps) where I can set
the command line arguments
At OpenNLP we take the gold data, extract the text, run
it through a one of our components and compute the
scores on the fly.
In your case I would do it similar. I would take the XMI files
generated from the gold standard corpus, copy the text
and other input data from the initial view to a
Hi all,
I have a pretty generic UIMA AS client I reuse for various
analysis pipelines. The client gets its input from an ActiveMQ
queue and then sends it on to my UIMA AS services via the
UIMA AS Client API.
The loop which is sending requests to the UIMA AS service
is using the sendCAS method.
On 11/18/11 3:17 PM, Spico Florin wrote:
I'm using UIMA ConceptMapper Annotator. Due to the fact that its dictionary
can be changed outside the UIMA pipeline(we have this scenario),
I would like to reload the content of used dictionary without restarting
the whole pipeline. The pipeline is
On 10/11/11 10:33 PM, Coarr, Matt wrote:
First, is the getAddress() method on Annotation (derived from FeatureStructureImpl
according to the javadocs) the same value as the id value in the xmi
serialization?
As far as I know the ids are re-mapped at least when the CAS is created
from an xmi
On 10/6/11 7:43 AM, Thilo Götz wrote:
We use hadoop with UIMA. Here's the fit, in one case:
1) UIMA runs as the map step; we put the uima pipeline into the mapper. Hadoop
has a configure (?) method where you can stick the creation and set up of the
uima pipeline, similar to UIMA's
Hello,
UIMA itself is just a framework to build analysis pipelines. To analyze
HTML, PDF or Word documents
you need a component which can extract the text from these formats.
You can use Apache Tika together with our Tika integration in the addons
project
to extract text from various data
On 8/24/11 8:38 PM, Richard Eckart de Castilho wrote:
I recently had trouble connecting to a JMX server running on Linux (not EC2 though). It
worked after I specified a java.rmi.server.hostname
The parameters I used on the server side in the end were:
-Djava.rmi.server.hostname=192.168.0.25
On 8/9/11 3:07 PM, Richard Eckart de Castilho wrote:
That's true for users. It would still be nice for the developer
one-time-setup to mention that this bundle needs to be installed. Because
when I run e.g. the CAS Editor module as an Eclipse application, Eclipse does not try to
download
I am just looking for a best practice or some advice how this is usually
done.
Jörn
On 7/29/11 2:05 PM, Jörn Kottmann wrote:
Hi all,
I changed my UIMA-AS Services a bit, and have now
one analysis pipeline per language.
Up to now I only had one pipeline and deployed it with the
provided
On 5/5/11 12:37 PM, Jens Grivolla wrote:
It seems to have picked it up ok, but I'm getting errors when opening
an XMI with the Annotation editor:
Caused by: org.eclipse.core.internal.resources.ResourceException:
Resource '/OneOfMyClosedProjects' is not open.
at
On 5/5/11 12:55 PM, Jens Grivolla wrote:
On 05/05/2011 12:37 PM, Jens Grivolla wrote:
I'm getting errors when opening an
XMI with the Annotation editor:
Caused by: org.eclipse.core.internal.resources.ResourceException:
Resource '/OneOfMyClosedProjects' is not open.
at
On 5/5/11 2:41 PM, Jens Grivolla wrote:
On 05/05/2011 01:55 PM, Jörn Kottmann wrote:
On 5/5/11 1:44 PM, Jörn Kottmann wrote:
That sounds like one more good reason to do that. Another one I thought
of is that it is confusing when you add an annotation which you cannot
see afterward.
So lets
On 5/5/11 6:09 PM, Jens Grivolla wrote:
On 05/05/2011 03:04 PM, Jörn Kottmann wrote:
On 5/5/11 2:41 PM, Jens Grivolla wrote:
On 05/05/2011 01:55 PM, Jörn Kottmann wrote:
On 5/5/11 1:44 PM, Jörn Kottmann wrote:
That sounds like one more good reason to do that. Another one I
thought
On 5/4/11 11:10 AM, Jens Grivolla wrote:
Hi,
I have recently started using the Annotation Editor (as installed in
Eclipse from http://www.apache.org/dist/uima/eclipse-update-site/,
i.e. the official 2.3.1 version).
In order to add annotations it seems that you need to select the
annotation
On 4/4/11 2:17 PM, Richard Eckart de Castilho wrote:
Hi Jörn,
what is the suggested way to detect a text sofa?
As far as I know the suggested way of doing it is via the mime type, right?
Which options remain when the mime type is not set? Is CAS.getDocumentText !=
null appropriate ?
in my
Hi all,
some might already know it, the new Solr 3.1 has now support for UIMA:
http://wiki.apache.org/solr/SolrUIMA
Jörn
On 4/4/11 8:43 PM, Eddie Epstein wrote:
On Mon, Apr 4, 2011 at 6:52 AM, Jörn Kottmannkottm...@gmail.com wrote:
Hi all,
what is the suggested way to detect a text sofa?
As far as I know the suggested way of doing it is via
the mime type, right?
Which options remain when the mime type is not
On 3/2/11 3:25 PM, Adam Lally wrote:
file:com/apache.d.txt is a relative path; relative paths for resources are
resolved using the
classpath and/or the datapath. For the file protocol, URLs starting with
file:/ orfile:/// are absolute.
What is the default data path directory when deploying
On 3/1/11 3:25 PM, Jaroslaw Cwiklik wrote:
Hmm, strange. Perhaps putting the process in a background would help like
so: nohup bin/deployAsyncService.sh
Should be easy to test. Start the process and exit the shell. See what
happens.
Anything in the log or console indicating OOM or some other
On 2/14/11 4:49 AM, Radhouane Aniba wrote:
Hello everyone,
Quite unusual request to this list, I am wondering if there is any analysis
engine that allow to mine MBOX like formats such as the famous mailman
mailing list archives in a way that it allow to structure these kind of data
into
On 1/25/11 1:15 PM, Peter Klügl wrote:
Hello,
how can I open a xmiCAS that's not in a corpus folder? I'm using the
version of the current update site. Is this functionality aldready
included there or not until the next release.
Yes that should be possible. Just double click the xmi file
On 1/25/11 1:26 PM, Peter Klügl wrote:
Sorry, some additional questions:
Can I somehow automatically activate the annotation mode of several
types? We want to annotate more than 12 different types and it takes
some time for each documents to select these types.
Yes that should just work.
On 1/20/11 1:40 PM, Peter Klügl wrote:
Hello,
when using the CAS Editor I have two problems and I want to ask if I'm
doing something wrong:
I can't open a xmi if it contains annotations of types that are not
defined in the specified type system.
Yes, that is a limitation which is there.
On 1/20/11 2:00 PM, Peter Klügl wrote:
Hello Jörn,
Am 20.01.2011 13:49, schrieb Jörn Kottmann:
On 1/20/11 1:40 PM, Peter Klügl wrote:
Hello,
when using the CAS Editor I have two problems and I want to ask if
I'm doing something wrong:
I can't open a xmi if it contains annotations
On 12/2/10 5:05 PM, Philip Ogren wrote:
I am wondering if it is possible to run the CAS Editor as a
stand-alone application or if it is only available as a plugin within
Eclipse.
It could be a part of a RCP application. There might be still a few
minor issues which must
be solved, but I am
Hi everyone,
is it possible to only serialize one view of a CAS ?
In my case the _InitialView contains an xml document, which
is transformed by an AE into a plain text representation, and
placed in a view called Article.
The serialization code now should only write the Article
view into the
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