Re: [BioMart Users] Problem getting cDNA data using Perl script

2011-07-16 Thread Junjun Zhang
include sequence mart. Junjun Sent from my BBerry From: pip pipster [mailto:pipster...@yahoo.com] Sent: Thursday, July 14, 2011 05:41 PM To: users@biomart.org Subject: [BioMart Users] Problem getting cDNA data using Perl script Hello - I'm having trouble getting cDNA sequences using the bio

Re: [BioMart Users] Problem getting cDNA data using Perl script

2011-07-15 Thread pip pipster
uot;'pipster...@yahoo.com'" ; "'users@biomart.org'" Sent: Thursday, July 14, 2011 6:03 PM Subject: Re: [BioMart Users] Problem getting cDNA data using Perl script In addition to ensembl gene mart, you will need to include ensembl sequence mart in your registry file.

Re: [BioMart Users] Problem getting cDNA data using Perl script

2011-07-14 Thread Junjun Zhang
: Thursday, July 14, 2011 05:41 PM To: users@biomart.org Subject: [BioMart Users] Problem getting cDNA data using Perl script Hello - I'm having trouble getting cDNA sequences using the bioperl/biomart api's. Here is an example query that I'm building. It works fine until I add the &

[BioMart Users] Problem getting cDNA data using Perl script

2011-07-14 Thread pip pipster
Hello - I'm having trouble getting cDNA sequences using the bioperl/biomart api's.  Here is an example query that I'm building.  It works fine until I add the "cdna" attribute.  Once I add that attribute, I get the message, "Attribute 'cdna' not found in dataset default.hsapiens_gene_ensembl" P