Hi Syed,
Thanks for your reply:
Here is where you can fire the query to:
http://reactomedev.oicr.on.ca/cgi-bin/mart
And the canned query you want to try is "All modified proteins in a pathway".
The other canned queries are working fine.
Let me know if you need further details.
In the meantime, I wi
Hi Nelson, not sure which server to post this query to. I tried
reactome.org: but no luck. I guess the second dataset isnt there.
Anyhow, could you please do some detective work and start adding
attributes of second dataset one by one and see which one causes it
fail. Otherwise, let me have
Hi Syed,
Here is the XML equivalent of the query that works:
http://pastebin.com/gcNrKnM8
Thanks,
Nelson
> Sorry Nelson, i might have missed few details, but could you send me the
> XML equivalent of the query ?
>
>
> On 27/09/2011 15:20, nnde...@ebi.ac.uk wrote:
>> Hi Junjun& Syed,
>> I still
Sorry Nelson, i might have missed few details, but could you send me the
XML equivalent of the query ?
On 27/09/2011 15:20, nnde...@ebi.ac.uk wrote:
Hi Junjun& Syed,
I still have problems with this earlier reported query. So I have tried to
tweak a few parameters (listed below) as I generated
Hi Junjun & Syed,
I still have problems with this earlier reported query. So I have tried to
tweak a few parameters (listed below) as I generated error logs, hopefully
these will be more useful to diagnosing the problem.
You correctly pointed out the query involves a join between two datasets
link
Hi Syed,
Yes, this query comes from a canned query sent via web service.
Cheers,
Nelson
> Hi Nelson,
>
> how do you compile this query from the interface/web service ?
>
> Best,
> Syed
>
> On 26/09/2011 14:47, nnde...@ebi.ac.uk wrote:
>> Hi,
>> I am getting an error from one of my queries along t
This SQL doesn't look correct, something is missing right before the 'AND'
for the part that is joined with 'OR', with the exception of the last item
as below:
((pathway__referencepeptidesequence__dm.referencedatabase_uniprot =
'P49327') AND (pathway__referencednasequence__dm.referencedatabase_ens
Hi Nelson,
how do you compile this query from the interface/web service ?
Best,
Syed
On 26/09/2011 14:47, nnde...@ebi.ac.uk wrote:
Hi,
I am getting an error from one of my queries along the lines of SQL syntax
being the cause, am not sure what the real problem is though. I set the
log4perl.con
Hi,
I am getting an error from one of my queries along the lines of SQL syntax
being the cause, am not sure what the real problem is though. I set the
log4perl.conf to debug mode and I got back a more elaborate error report
http://pastebin.com/9rqKBfWR
Anyone know what the problem is?
Thanks,
Nelso
