Re: [OMPI users] xcode and openmpi

2007-10-25 Thread Tony Sheh
I think i found a solution, and i'll post it here: Following ./configure and make all install your open mpi libs and headers should be in /usr/local/lib and /usr/local/include. Header Search Paths: /usr/local/include Library Search Paths: /usr/local/lib add the following (4) frameworks/libra

Re: [OMPI users] Process 0 with different time executing the same code

2007-10-25 Thread jody
HI I'm not sure if that is a problem, but in MPI applications you shoud use MPI_WTime() for time-measurements Jody On 10/25/07, 42af...@niit.edu.pk <42af...@niit.edu.pk> wrote: > Hi all, >I am a research assistant (RA) at NUST Pakistan in High Performance > Scientific Computing Lab. I am

Re: [OMPI users] Merging Intracommunicators

2007-10-25 Thread Jeff Squyres
On Oct 25, 2007, at 11:16 AM, Edgar Gabriel wrote: If you have the following scenario: - A spawns B, gets intercomm AB - A spawns C, gets intercomm AC (that does not include B) - ...repeat N times (e.g., to AN) well, how about the following for your example: - D = intercomm_merge (AB) - E =

Re: [OMPI users] Merging Intracommunicators

2007-10-25 Thread Edgar Gabriel
Jeff Squyres wrote: On Oct 25, 2007, at 12:11 AM, George Bosilca wrote: Now you cast a doubt on me. As far as I remember, there is a trick in MPI2 to do this. You can merge your inter-communicators into one intra-communicators with MPI_Intercomm_merge and then use MPI_Intercomm_create to s

Re: [OMPI users] xcode and ompi

2007-10-25 Thread Brian W. Barrett
On Sun, 21 Oct 2007, Tony Sheh wrote: I'm working in xcode and i'm trying to build an application that links against the OMPI libraries. So far i've included the following files in the build: libmpi.dylib libopen-pal.dylib libopen-rte.dylib and the errors i get are Undefined symbols: all

[OMPI users] Solved! (Was: Cannot suppress openib error message)

2007-10-25 Thread Dirk Eddelbuettel
Yay, three cheers for Jeff. Reverting to the stock libibverbs package (still at 1.0-4 for the version of Ubuntu I'm running at work as I haven't upgraded to last week's Ubuntu 7.10 release) and rebuilding the Open MPI 1.2.4 deb packages under it fixes the openib error message issue. So even fo

Re: [OMPI users] Cannot suppress openib error message

2007-10-25 Thread Dirk Eddelbuettel
On 25 October 2007 at 07:54, Jeff Squyres wrote: | We will not dlopen libibverbs.so directly -- we will only dlopen the | mca_btl_openib.so file. The dynamic linker will automatically open | all of its dependencies. If those dependencies cannot be found / | symbols cannot be resolved, the

Re: [OMPI users] Cannot suppress openib error message

2007-10-25 Thread Jeff Squyres
On Oct 24, 2007, at 10:05 PM, Dirk Eddelbuettel wrote: | > | If I had to guess, the systems where you don't see the warning are | > | systems that have OFED loaded. | > | > I am pretty sure that none of the systems (at work) have IB | > hardware. I am | > very sure that my home systems do not

Re: [OMPI users] Merging Intracommunicators

2007-10-25 Thread Jeff Squyres
On Oct 25, 2007, at 12:11 AM, George Bosilca wrote: Now you cast a doubt on me. As far as I remember, there is a trick in MPI2 to do this. You can merge your inter-communicators into one intra-communicators with MPI_Intercomm_merge and then use MPI_Intercomm_create to spawn a new inter-comm

[OMPI users] Process 0 with different time executing the same code

2007-10-25 Thread 42aftab
Hi all, I am a research assistant (RA) at NUST Pakistan in High Performance Scientific Computing Lab. I am working on the parallel implementation of the Finitie Difference Time Domain (FDTD) method using MPI. I am using the OpenMPI environment on a cluster of 4 SunFire v890 cluster connected

Re: [OMPI users] Merging Intracommunicators

2007-10-25 Thread George Bosilca
Now you cast a doubt on me. As far as I remember, there is a trick in MPI2 to do this. You can merge your inter-communicators into one intra-communicators with MPI_Intercomm_merge and then use MPI_Intercomm_create to spawn a new inter-comm over the 2 childs world (using the common parent as