Re: [OMPI users] Open MPI 1.2.4 verbosity w.r.t. osc pt2pt

2007-12-13 Thread Dirk Eddelbuettel
On 13 December 2007 at 13:17, Lisandro Dalcin wrote: | Perhaps I was not clear enough. There are many public ways of | importing modules in Python. Modules can came mainly from two sources: | pure Python code, or C compiled code. In the later case (called | extension modules), they are normally a

Re: [OMPI users] Open MPI 1.2.4 verbosity w.r.t. osc pt2pt

2007-12-13 Thread Jeff Squyres
On Dec 13, 2007, at 6:01 PM, Brian W. Barrett wrote: But it is easy for OPen MPI to figure out whether it's statically or dynamically linked, as libtool compiles the code twice if building both static and shared and you could poke at #defines to figure out what's going on -- easy enough to de

[OMPI users] ORTE_ERROR_LOG: Data unpack had inadequate space in file gpr_replica_cmd_processor.c at line 361

2007-12-13 Thread Qiang Xu
I installed OpenMPI-1.2.4 on our cluster. Here is the compute node infor [qiang@compute-0-1 ~]$ uname -a Linux compute-0-1.local 2.6.9-42.0.2.ELsmp #1 SMP Wed Aug 23 00:17:26 CDT 2006 i686 i686 i386 GNU/Linux [qiang@compute-0-1 bin]$ gcc -v Reading specs from /usr/lib/gcc/i386-redhat-linux/3.4.6/

[OMPI users] Bad behavior in Allgatherv when a count is 0

2007-12-13 Thread Moreland, Kenneth
I have found that on rare occasion Allgatherv fails to pass the data to all processes. Given some magical combination of receive counts and displacements, one or more processes are missing some or all of some arrays in their receive buffer. A necessary, but not sufficient, condition seems to be t

Re: [OMPI users] undefined reference to `pthread_atfork' (Lahey Fujitsu compiler AMD64)

2007-12-13 Thread Brian W. Barrett
On Wed, 12 Dec 2007, Alex Pletzer wrote: I'm on a AMD64 box (Linux quartic.txcorp.com 2.6.19-1.2288.fc5 #1 SMP Sat Feb 10 14:59:35 EST 2007 x86_64 x86_64 x86_64 GNU/Linux) and compiled openmpi-1.2.4 using the Lahey-Fujitsu compiler (lfc). The compilation of openmpi went fine. $ ../configure --

Re: [OMPI users] Open MPI 1.2.4 verbosity w.r.t. osc pt2pt

2007-12-13 Thread Brian W. Barrett
On Thu, 13 Dec 2007, Jeff Squyres wrote: Specifically: it would probably require some significant hackery in the OMPI build process to put in a #define that indicates whether OMPI is being built statically or not. But the AM/LT process shields this information from the build process by design (

Re: [OMPI users] parpack with openmpi

2007-12-13 Thread Brock Palen
I solved the problem and the quote 'we have met the enemy and he is us' fits prefectly. The reason was I had a stale object file laying around from when i used a different compiler. Removing mpif.h as they are listed in the PARPACK ARmake.inc and recompiling worked. Sorry for the red her

Re: [OMPI users] error with Vprotocol pessimist

2007-12-13 Thread Aurelien Bouteiller
If you want to use the pessimist message logging you have to use the "- mca vprotocol pessimist" flag on your command line. This should work despite the bug because if I understand correctly, the issue you experience should occur only when fault tolerance is disabled. I have troubles to reprod

Re: [OMPI users] Open MPI 1.2.4 verbosity w.r.t. osc pt2pt

2007-12-13 Thread Lisandro Dalcin
On 12/13/07, Jeff Squyres wrote: > On Dec 12, 2007, at 7:47 PM, Lisandro Dalcin wrote: > Specifically: it would probably require some significant hackery in > the OMPI build process to put in a #define that indicates whether OMPI > is being built statically or not. But the AM/LT process shields t

Re: [OMPI users] Problems with GATHERV on one process

2007-12-13 Thread Moreland, Kenneth
Excellent. Thanks. -Ken > -Original Message- > From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On > Behalf Of Jeff Squyres > Sent: Thursday, December 13, 2007 6:02 AM > To: Open MPI Users > Subject: Re: [OMPI users] Problems with GATHERV on one process > > Correct.

Re: [OMPI users] Compiling 1.2.4 using Intel Compiler 10.1.007 on Leopard

2007-12-13 Thread Jeff Squyres
On Dec 12, 2007, at 1:18 PM, Warner Yuen wrote: It seems that the problems are partially the compilers fault, maybe the updated compilers didn't catch all the problems filed against the last release? Why else would I need to add the "-no-multibyte- chars" flag for pretty much everything that

Re: [OMPI users] Open MPI 1.2.4 verbosity w.r.t. osc pt2pt

2007-12-13 Thread Jeff Squyres
On Dec 12, 2007, at 7:47 PM, Lisandro Dalcin wrote: You should, yes. OK, but now I realize that I cannot simply call libtool dlopen() inconditionally, as libmpi.so could not exist in a static lib build. Right. Or it could be libmpi.dylib (OS X). I don't know if other extensions exist out

Re: [OMPI users] Problems with GATHERV on one process

2007-12-13 Thread Jeff Squyres
Correct. Here's the original commit that fixed the problem: https://svn.open-mpi.org/trac/ompi/changeset/16360 And the commit to the v1.2 branch: https://svn.open-mpi.org/trac/ompi/changeset/16519 On Dec 12, 2007, at 2:43 PM, Moreland, Kenneth wrote: Thanks Tim. I've since noticed

Re: [OMPI users] error with Vprotocol pessimist

2007-12-13 Thread Thomas Ropars
I still have the same error after update (r16951). I have the lib/openmpi/mca_pml_v.so file in my builld and the command line I use is: mpirun -np 4 my_application Thomas Aurelien Bouteiller wrote: I could reproduce and fix the bug. It will be corrected in trunk as soon as the svn is onlin

Re: [OMPI users] Open MPI 1.2.4 verbosity w.r.t. osc pt2pt

2007-12-13 Thread Jeff Squyres
Brian raised a good point -- your project must already have a portable solution for dlopen() since it's loading your plugin. Can you not use that? On Dec 12, 2007, at 8:40 AM, Jeff Squyres wrote: On Dec 11, 2007, at 9:08 AM, Lisandro Dalcin wrote: (for a nicely-formatted refresher of the