Re: [OMPI users] Help: Infiniband interface hang

2009-09-02 Thread Lee Amy
On Wed, Sep 2, 2009 at 11:59 PM, Lenny Verkhovsky wrote: > have you tried running hostname > $mpirun -np 2 --mca btl openib,self --host node1,node2 hostname > if it hangs, it's not Open MPI problem, check your setup, > especially check your firewall settings and disable it. > On Wed, Sep 2, 2009 at

[OMPI users] Open MPI in a PC network running Windows XP

2009-09-02 Thread George Tsigaridas
Dear Open MPI users Do you have any suggestions on how to install and use Open MPI in a PC network running Windows XP? Thank you in advance George Tsigaridas

[OMPI users] Help!

2009-09-02 Thread guosong
I am new to open MPI I have a simple program below: #include #include #include "mpi.h" using namespace std; void* backID(void* arg) { int myid; MPI_Comm_rank(MPI_COMM_WORLD, &myid); cout << myid << " create background ID" << endl; int v; MPI_Status status; int m; int x, y; int count

Re: [OMPI users] Help: Infiniband interface hang

2009-09-02 Thread Lenny Verkhovsky
have you tried running hostname $mpirun -np 2 --mca btl openib,self --host node1,node2 hostname if it hangs, it's not Open MPI problem, check your setup, especially check your firewall settings and disable it. On Wed, Sep 2, 2009 at 2:06 PM, Lee Amy wrote: > Hi, > > I encountered a very very con

Re: [OMPI users] OMPI error in MPI_Cart_create (in code that works withMPICH2)

2009-09-02 Thread Greg Fischer
Thanks, Jeff. OK, I've found the offending code and gotten rid of the fork() warning. I'm still left with this: [bl302:26556] *** An error occurred in MPI_Cart_create [bl302:26556] *** on communicator MPI_COMM_WORLD [bl302:26556] *** MPI_ERR_ARG: invalid argument of some other kind [bl302:26556]

Re: [OMPI users] build problems - undefined referenceto `lt_libltdlc_LTX_preloaded_symbols and libtool install

2009-09-02 Thread Michael Hines
On Wed, 2009-09-02 at 10:51 +0300, Jeff Squyres wrote: > On Aug 27, 2009, at 8:34 PM, Michael Hines wrote: > > libtool: link: gcc -O3 -DNDEBUG -finline-functions -fno-strict- > > aliasing > > -pthread -fvisibility=hidden -o opal_wrapper > > opal_wrapper.o ../../../opal/.libs/libopen-pal.a -ldl

Re: [OMPI users] build problems - undefined referenceto `lt_libltdlc_LTX_preloaded_symbols and libtool install

2009-09-02 Thread Michael Hines
Hello. Thanks! On Wed, 2009-09-02 at 10:51 +0300, Jeff Squyres wrote: > On Aug 27, 2009, at 8:34 PM, Michael Hines wrote: ... > > ltdl.c:(.text+0x10d3): undefined reference to > > `lt_libltdlc_LTX_preloaded_symbols' > > > > Hmm. This feels like a mismatch of libtool somehow... (ltdl is a > par

[OMPI users] Help: Infiniband interface hang

2009-09-02 Thread Lee Amy
Hi, I encountered a very very confused problem when running IMB via two nodes by using IB. OS: RHEL 5.2 OFED Version: 1.4.1 MPI: OpenMPI 1.3.2 (OFED owned) I run IMB-MPI1 provided by OFED OpenMPI tests. The command line is mpirun -np 2 --mca btl openib,self --host node1,node2 IMB-MPI1 After th

Re: [OMPI users] Running problem

2009-09-02 Thread amjad ali
Hi Jakob, Thanks for reply. Please see below. On Tue, Sep 1, 2009 at 1:40 PM, J.S. van Bethlehem < j.s.van.bethle...@astro.rug.nl> wrote: > >From the look of it, this is not an OMPI problem, but a problem with > your paths. You need to make sure that libGLU.so.1 can be found by the > system at ru

Re: [OMPI users] explicit routing for multiple network interfaces

2009-09-02 Thread Jeff Squyres
If you don't use btl_tcp_if_include, Open MPI should use all available ethernet devices, and *should* (although I haven't tested this recently) only use devices that are routable to specific peers. Specifically, if you're on a node with eth0-3, it should use all of them to connect to anoth

Re: [OMPI users] [OT] : Programming on PS3 Cell BE chip ?

2009-09-02 Thread Attila Börcs
Hi! The CMS (Cell Messaging Layer) is a function collection, wherewith you can provide spu with parallel communications. I never user it, just read about this technology. I read this fact that, in CMS function environment just the synchronized communication is allowable, you can't programming the

Re: [OMPI users] Heterogeneous SLURM cluster segfaults on largetransfers

2009-09-02 Thread Jeff Squyres
Can you try without the --with-threads configure argument? On Aug 28, 2009, at 11:48 PM, James Gao wrote: Hi everyone, I've been having a pretty odd issue with Slurm and openmpi the last few days. I just set up a heterogeneous cluster with Slurm consisting of P4 32 bit machines and a few new i7

Re: [OMPI users] openmpiu 1.3.3. with OpenFOAM

2009-09-02 Thread Jeff Squyres
I'll let the Myricom guys answer further for message passing optimizations, but some general tips: - Yes, using processor affinity might help. Add "--mca mpi_paffinity_alone 1" to your mpirun command line and see if that helps. - I *believe* that HP MPI uses processor affinity by default -

Re: [OMPI users] build problems - undefined referenceto `lt_libltdlc_LTX_preloaded_symbols and libtool install

2009-09-02 Thread Jeff Squyres
On Aug 27, 2009, at 8:34 PM, Michael Hines wrote: I'm building from todays svn co on an x86_64 centos 5 Linux 2.6.18-128.1.10.el5 #1 SMP using m4 (GNU M4) 1.4.13 automake (GNU automake) 1.11 autoconf (GNU Autoconf) 2.64 ltmain.sh (GNU libtool) 2.2.6 gcc (GCC) 4.3.2 These versions should all

Re: [OMPI users] OpenMPI code snippet causes a dead loop

2009-09-02 Thread Jeff Squyres
I am unable to replicate your problem with the code below -- can you be more precise about your system details, Open MPI version, etc.? On Aug 30, 2009, at 8:14 PM, Changsheng Jiang wrote: Hi, I reinstalled openmpi to a svn snapshot version to fixed the MPI_File_open return 16 error, but the

Re: [OMPI users] Open MPI:Problem with 64-bitopenMPI andintel compiler

2009-09-02 Thread Jeff Squyres
Interesting. So to recap, just so that I understand, was the problem that Torque was restricting the stack size of your application processes (which apparently was only problematic in 64 bit mode applications)? On Aug 31, 2009, at 9:42 PM, Sims, James S. Dr. wrote: After much more work o

Re: [OMPI users] OpenMPI 1.3.3 with Boost.MPI ?

2009-09-02 Thread Jeff Squyres
On Sep 1, 2009, at 4:57 AM, Ashika Umanga Umagiliya wrote: It worked fine.But I have small issue.Following code demonstrates how I use mpi::intercommunicator.But in the spawned child processes, the intercommunicator size is same as number of spawned processes.But it should be 1 ,right? Beca

Re: [OMPI users] OpenMPI 1.3.3 with Boost.MPI ?

2009-09-02 Thread Jeff Squyres
On Aug 28, 2009, at 3:32 PM, Federico Golfrè Andreasi wrote: Well from what I know Boost.MPI contains only MPI-1 functions (but refer to the boost mailing list for support http://lists.boost.org/mailman/listinfo.cgi/boost-users) ; so Intercommunicators are not managed by the Boost.MPI library,

Re: [OMPI users] OMPI error in MPI_Cart_create (in code that works withMPICH2)

2009-09-02 Thread Jeff Squyres
*Something* in your code is calling fork() -- it may be an indirect call such as system() or popen() or somesuch. This particular error message is only printed during a "fork pre-hook" that Open MPI installs during MPI_INIT (registered via pthread_atfork()). Grep through your code for call