Re: [OMPI users] padb and openmpi

2010-08-17 Thread Ashley Pittman
On 17 Aug 2010, at 21:20, Steve Wise wrote: > [ompi@hpc-hn1 ~]$ padb --show-jobs --config-option rmgr=orte > 65427 > [ompi@hpc-hn1 ~]$ padb --all --proc-summary --config-option rmgr=orte > Warning, failed to locate ranks [0-3] > > Any ideas on what I am doing wrong? Nothing that springs to mind

[OMPI users] padb and openmpi

2010-08-17 Thread Steve Wise
Hi, I'm trying to use padb 3.0 to get stack traces on open-mpi / IMB1 runs. While the job is running, I do run this, but get an error: [ompi@hpc-hn1 ~]$ padb --show-jobs --config-option rmgr=orte 65427 [ompi@hpc-hn1 ~]$ padb --all --proc-summary --config-option rmgr=orte Warning, failed to l

[OMPI users] Building OpenMPI with DevStudio 2010

2010-08-17 Thread Rick Hullinger
I am trying to get OpenMPI built on a windows machine using Dev Studio, and I'm not having any luck. I'm hoping someone can point me in the right direction. Here are the details: Environment: Windows 7, (64 bit OS, but I’m performing a 32 bit build), Attempting to build under Dev Studio 2010 Steps

Re: [OMPI users] Does OpenMPI 1.4.1 support the MPI_IN_PLACE designation ...

2010-08-17 Thread Richard Walsh
Hey Yong, This is very helpful ... I have spent the morning verifying that OCTOPUS 3.2 code is correct and that even other sections of the code that use: MPI_IN_PLACE are compiled without a problem. Both working and the non-working routine properly include "use mpi_h" module which is built fr

Re: [OMPI users] mpic++ compilation : C++ program with MPI-C calls

2010-08-17 Thread Lisandro Dalcin
On 17 August 2010 04:16, Manoj Vaghela wrote: > Hi, > > I am compiling a C++ program with MPI-C function calls with mpic++. > > Is there effect of this on efficiency/speed of parallel program? > No. -- Lisandro Dalcin --- CIMEC (INTEC/CONICET-UNL) Predio CONICET-Santa Fe Colectora R

Re: [OMPI users] Does OpenMPI 1.4.1 support the MPI_IN_PLACE designation ...

2010-08-17 Thread Yong Qin
Hi Richard, We have reported this to Intel as a bug in 11.1.072. If I understand it correctly you are also compiling Octopus with Intel 11.1.072. As we have tested, Intel compilers 11.1.064 and all the 10.x, GNU, PGI, etc., do not exhibit this issue at all. We are still waiting for words from Inte

Re: [OMPI users] Problem submitting TORQUE jobs with ppn=1

2010-08-17 Thread Gus Correa
Hi Gijsbert This may be more on the Torque side, but not necessarily so. ClusterResources has decent documentation: http://www.clusterresources.com/pages/products/torque-resource-manager.php 1) To verify Torque+OpenMPI functionality/support try first a non-mpi executable, e.g.: #PBS -lnodes=4:p

Re: [OMPI users] Problem submitting TORQUE jobs with ppn=1

2010-08-17 Thread Gijsbert Wiesenekker
On Aug 17, 2010, at 11:29 , Gijsbert Wiesenekker wrote: > I have a four-node quad core cluster. I am running OpenMPI (version 1.4.2) > jobs with Torque (version 2.4.8). I can submit jobs using > #PBS -lnodes=4:ppn=4 > And 16 processes are launched. However if I use > #PBS -lnodes=4:ppn=1 > or >

Re: [OMPI users] [openib] segfault when using openib btl

2010-08-17 Thread Eloi Gaudry
Hi Nysal, There is only one thread invoking MPI functions in our applications. Others threads are related to flexlm protection routines and some self-diagnostics routines that don't use any MPI functions. I built a version of our application, just ot be sure, without any other thread that the

Re: [OMPI users] [openib] segfault when using openib btl

2010-08-17 Thread Nysal Jan
Hi Eloi, >Do you think that a thread race condition could explain the hdr->tag value ? Are there multiple threads invoking MPI functions in your application? The openib BTL is not yet thread safe in the 1.4 release series. There have been improvements to openib BTL thread safety in 1.5, but it is s

[OMPI users] Problem submitting TORQUE jobs with ppn=1

2010-08-17 Thread Gijsbert Wiesenekker
I have a four-node quad core cluster. I am running OpenMPI (version 1.4.2) jobs with Torque (version 2.4.8). I can submit jobs using #PBS -lnodes=4:ppn=4 And 16 processes are launched. However if I use #PBS -lnodes=4:ppn=1 or #PBS -lnodes=4 The call to MPI_Init is succesful, but the call to MPI_

Re: [OMPI users] [openib] segfault when using openib btl

2010-08-17 Thread Eloi Gaudry
Hi Nysal, This is what I was wondering, it hdr->tag was expected to be null or not. I'll soon send a valgrind output to the list, hoping this could help to locate an invalid memory access allowing to understand why reg->cbfunc / hdr->tag are null. Do you think that a thread race condition coul

Re: [OMPI users] [openib] segfault when using openib btl

2010-08-17 Thread Eloi Gaudry
On Monday 16 August 2010 19:14:47 Jeff Squyres wrote: > On Aug 16, 2010, at 10:05 AM, Eloi Gaudry wrote: > > I did run our application through valgrind but it couldn't find any > > "Invalid write": there is a bunch of "Invalid read" (I'm using 1.4.2 > > with the suppression file), "Use of uninitial

[OMPI users] mpic++ compilation : C++ program with MPI-C calls

2010-08-17 Thread Manoj Vaghela
Hi, I am compiling a C++ program with MPI-C function calls with mpic++. Is there effect of this on efficiency/speed of parallel program? Thanks. -- Manoj Vaghela