[OMPI users] problem with mca_pml_ob1.so in openmpi-1.8.2rc2

Hi, today I tried to track down the error which I reported for my small program (running on Solaris 10 Sparc). tyr hello_1 121 mpiexec -np 2 a.out Process 1 of 2 running on tyr.informatik.hs-fulda.de Process 0 of 2 running on tyr.informatik.hs-fulda.de Now 1 slave tasks are sending greetings. ld

[OMPI users] bus error with openmpi-1.8.2rc2 on Solaris 10 Sparc

Hi, I have installed openmpi-1.8.2rc2 with gcc-4.9.0 on Solaris 10 Sparc and I receive a bus error, if I run a small program. tyr hello_1 105 mpiexec -np 2 a.out [tyr:29164] *** Process received signal *** [tyr:29164] Signal: Bus Error (10) [tyr:29164] Signal code: Invalid address alignment (1)

[OMPI users] SIGSEGV for Java program in openmpi-1.8.2rc2 on Solaris 10

Hi, I have installed openmpi-1.8.2rc2 with Sun c 5.12 on Solaris 10 Sparc and x86_64 and I receive a segmentation fault, if I run a small Java program. rs0 java 105 mpiexec -np 1 java InitFinalizeMain # # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb) at pc=0x

[OMPI users] missing link option for openmpi-1.8.2rc2 on Linux

Hi, I installed openmpi-1.8.2rc2 on "openSUSE Linux 12.1 x86_64" with Sun C 5.12 and get the following warning if I run a small Java program. I get no warning for my gcc-4.9.0 version of openmpi-1.8.2rc2. linpc1 java 109 mpiexec -np 1 java InitFinalizeMain Java HotSpot(TM) 64-Bit Server VM warni

Re: [OMPI users] problem with mca_pml_ob1.so in openmpi-1.8.2rc2

Can you try adding the #include to pml_ob1_isend.c And see if that resolves the issue? -Nathan On Fri, Jul 25, 2014 at 07:59:21AM +0200, Siegmar Gross wrote: > Hi, > > today I tried to track down the error which I reported for > my small program (running on Solaris 10 Sparc). > > tyr hello

Re: [OMPI users] bus error with openmpi-1.8.2rc2 on Solaris 10 Sparc

Siegmar -- This looks like the typical type of alignment error that we used to see when testing regularly on SPARC. :-\ It looks like the error was happening in mca_db_hash.so. Could you get a stack trace / file+line number where it was failing in mca_db_hash? (i.e., the actual bad code wil

Re: [OMPI users] SIGSEGV for Java program in openmpi-1.8.2rc2 on Solaris 10

That's quite odd that it only happens for Java programs -- it should happen for *all* programs, based on the stack trace you've shown. Can you print the value of the lds struct where the error occurs? On Jul 25, 2014, at 2:29 AM, Siegmar Gross wrote: > Hi, > > I have installed openmpi-1.8.2

Re: [OMPI users] SIGSEGV for Java program in openmpi-1.8.2rc2 on Solaris 10

I too have encountered this as mentioned in one of my previous emails ( http://comments.gmane.org/gmane.comp.clustering.open-mpi.user/21000). I've done many tests for our algorithms with 1.8.1 version and it didn't have this, but not sure about 1.8.2. Thank you, saliya On Fri, Jul 25, 2014 at 11

[OMPI users] Trying to use openmpi with MOM getting a compile error

OpenMOM-mpi I am trying to compile MOM and have installed openmpi 1.8.1 getting an installation error below Looking for some help in openmpi to make sure the mpif.h is loaded correctly Should I use an older version of openmpi? Thank You Dan Shell gfortran -Duse_netCDF -Duse_netCDF3 -Duse_libMPI -

Re: [OMPI users] Trying to use openmpi with MOM getting a compile error

Hi Dan This is not an Open MPI problem. This is most likely a problem with the MOM Makefile, which seems to be missing your Open MPI include directory. Change the mkmf.template file and replace the Fortran compiler name (gfortran) by the Open MPI (OMPI) Fortran compiler wrapper: mpifortran (or

Re: [OMPI users] Trying to use openmpi with MOM getting a compile error

Gus Thank you I give that a try. Dan Shell -Original Message- From: users [mailto:users-boun...@open-mpi.org] On Behalf Of Gus Correa Sent: Friday, July 25, 2014 1:15 PM To: Open MPI Users Subject: Re: [OMPI users] Trying to use openmpi with MOM getting a compile error Hi Dan This is no

Re: [OMPI users] SIGSEGV for Java program in openmpi-1.8.2rc2 on Solaris 10

I'm sorry but I can not reproduce the problem. I recompiled all from scratch using Java 8, and it works ok on Debian 7.5. Regards, Oscar El 25/07/14 18:28, Saliya Ekanayake escribió: I too have encountered this as mentioned in one of my previous emails (http://comments.gmane.org/gmane.comp.clu

Re: [OMPI users] Trying to use openmpi with MOM getting a compile error

On Jul 25, 2014, at 1:14 PM, Gus Correa wrote: > Change the mkmf.template file and replace the Fortran > compiler name (gfortran) by the Open MPI (OMPI) Fortran compiler wrapper: > mpifortran (or mpif90 if it still exists > in OMPI 1.8.1), mpifort is the preferred Fortran compiler wrapper name

Re: [OMPI users] Trying to use openmpi with MOM getting a compile error

On 07/25/2014 03:02 PM, Jeff Squyres (jsquyres) wrote: On Jul 25, 2014, at 1:14 PM, Gus Correa wrote: Change the mkmf.template file and replace the Fortran compiler name (gfortran) by the Open MPI (OMPI) Fortran compiler wrapper: mpifortran (or mpif90 if it still exists in OMPI 1.8.1), mpif

Re: [OMPI users] SIGSEGV for Java program in openmpi-1.8.2rc2 onSolaris 10

Hi Oscar, > I'm sorry but I can not reproduce the problem. > I recompiled all from scratch using Java 8, and it works ok on Debian 7.5. I have no problem with Linux, but I have one with Solaris 10. If I use the gcc-4.9.0 version everything works fine and if I use Sun C 5.12, I get the warning whi

Re: [OMPI users] problem with mca_pml_ob1.so in openmpi-1.8.2rc2

Hi, > Can you try adding the > > #include > > to pml_ob1_isend.c > > And see if that resolves the issue? Unfortunately it doesn't resolve the problem. I still get the same error messages. Kind regards Siegmar > > -Nathan > > On Fri, Jul 25, 2014 at 07:59:21AM +0200, Siegmar Gross wrote