Re: [OMPI users] MPI_Neighbor_alltoallw fails with mpi-1.8.3

2014-11-20 Thread Howard Pritchard
Hi Ghislain, I tried to run your test with mvapich 1.9 and get a "message truncated" failure at three ranks. Howard 2014-11-20 8:51 GMT-07:00 Ghislain Viguier : > Dear support, > > I'm encountering an issue with the MPI_Neighbor_alltoallw request of > mpi-1.8.3. > I have enclosed a test case w

Re: [OMPI users] MPI_Neighbor_alltoallw fails with mpi-1.8.3

2014-11-20 Thread Ghislain Viguier
For further information, the test also fails with MPI-1.8.4rc1. 2014-11-20 16:51 GMT+01:00 Ghislain Viguier : > Dear support, > > I'm encountering an issue with the MPI_Neighbor_alltoallw request of > mpi-1.8.3. > I have enclosed a test case with information of my workstation. > > In this test,

[OMPI users] MPI_Neighbor_alltoallw fails with mpi-1.8.3

2014-11-20 Thread Ghislain Viguier
Dear support, I'm encountering an issue with the MPI_Neighbor_alltoallw request of mpi-1.8.3. I have enclosed a test case with information of my workstation. In this test, I define a weighted topology for 5 processes, where the weight represent the number of buffers to send/receive : rank

[OMPI users] Open MPI SC'14 BOF slides

2014-11-20 Thread Jeff Squyres (jsquyres)
For those of you who weren't able to be at the SC'14 BOF yesterday -- and even for those of you who were there and wanted to be able to read the slides in a little more detail (and get the links from the slides) -- I have posted them here: http://www.open-mpi.org/papers/sc-2014/ Enjoy! --

Re: [OMPI users] job running out of memory

2014-11-20 Thread Ralph Castain
It wouldn’t be maffinity - that just tells the OS on a single node to ensure that the memory is local to the process. If you have a managed environment (i.e., there is a scheduler running that assigns nodes to jobs), then you would need to configure the scheduler to support that option (assumin

Re: [OMPI users] collective algorithms

2014-11-20 Thread Faraj, Daniel A
Gilles, Thanx for the valuable information. So this solves part of the puzzle. The next thing is know the cost of these algorithms. Some of them seem to be standard, however, I am afraid there could be some modifications that will ultimately alter the cost. Hence I asked for a paper. I will

Re: [OMPI users] job running out of memory

2014-11-20 Thread Jerry Mersel
Since there is no way to share memory across nodes is there a way to tell openmpi to run memory intensive Processes on nodes with a lot of memory? I think that it is called “maffinity”, but am not sure how to use it. With Blessings, always, Jerry Mersel [cid:image003.png@01CF80E7.62B7D810]