As I recall, the problem was that qrsh isn’t available on the backend compute
nodes, and so we can’t use a tree for launch. If that isn’t true, then we can
certainly adjust it.
> On Jan 17, 2017, at 9:37 AM, Mark Dixon wrote:
>
> Hi,
>
> While commissioning a new cluster, I wanted to run HPL
Hi,
While commissioning a new cluster, I wanted to run HPL across the whole
thing using openmpi 2.0.1.
I couldn't get it to start on more than 129 hosts under Son of Gridengine
(128 remote plus the localhost running the mpirun command). openmpi would
sit there, waiting for all the orted's to
Can you please attach your configure log. It looks like both MXM and the
Vader BTL (used for OSC) are complaining because they can't find your KNEM
installation.
Josh
On Tue, Jan 17, 2017 at 7:16 AM, Juan A. Cordero Varelaq <
bioinformatica-i...@us.es> wrote:
> Hi, I am running on my SCG cluster
Hi, I am running on my SCG cluster the following script (using qsub):
#!/bin/bash
#$-cwd
#$ -S /bin/bash
#$ -V
#$ -q normal
#$ -pe mpi 40
#$ -P Lab219
#$ -o output
#$ -e error
module load PhyML/3.3
mpirun --mca pml yalla -np 40 phyml-mpi -i proteic -b 10 -d aa
where phyml-mpi is the parallel ver
