Re: [OMPI users] MPI_Win_allocate: Memory alignment

2017-02-14 Thread Gilles Gouaillardet
Joseph, thanks for the report and the test program. the memory allocated by MPI_Win_allocate_shared() is indeed aligned on (4*communicator_size). i could not reproduce such a thing with MPI_Win_allocate(), but will investigate it. i fixed MPI_Win_allocate_shared() in

[OMPI users] MPI_Win_allocate: Memory alignment

2017-02-14 Thread Joseph Schuchart
Hi, We have been experiencing strange crashes in our application that mostly works on memory allocated through MPI_Win_allocate and MPI_Win_allocate_shared. We eventually realized that the application crashes if it is compiled with -O3 or -Ofast and run with an odd number of processors on

[OMPI users] Problem with MPI_Comm_spawn using openmpi 2.0.x + sbatch

2017-02-14 Thread Anastasia Kruchinina
Hi, I am trying to use MPI_Comm_spawn function in my code. I am having trouble with openmpi 2.0.x + sbatch (batch system Slurm). My test program is located here: http://user.it.uu.se/~anakr367/files/MPI_test/ When I am running my code I am getting an error: OPAL ERROR: Timeout in file

Re: [OMPI users] Error during installation

2017-02-14 Thread Jeff Squyres (jsquyres)
+1 on what Gilles said. >From config.log: configure:18397: gcpc --version >&5 ./configure: line 18399: gcpc: command not found configure:18408: $? = 127 That's the failure. Sent from my phone. No type good. On Feb 13, 2017, at 9:23 PM, Gilles Gouaillardet