Artem - do you have any suggestions?
On Aug 8, 2019, at 12:06 PM, Jing Gong mailto:gongj...@kth.se> > wrote:
Hi Ralph,
$ Did you remember to add "--mpi=pmix" to your srun cmd line?
On the cluster,
$ srun --mpi=list
srun: MPI types are...
srun: none
srun: openmpi
srun: pmi2
srun: pmix
srun: p
Hi Ralph,
> Remove the extra configure options from OMPI - you don't need to tell it
> --with-pmix or --with-slurm. It will "do the right thing" without that stuff.
Yes, "mpirun" works without these additional flags. But the the origin issue
"OMPI was not built with SLURM's PMI support ..." is
Hello,
I'd suggest to run PMIx application with Slurm to differentiate between
OMPI/PMIx issue versus Slurm/PMIx issue.
As the PMIx application you can use pmix perf tool:
https://github.com/pmix/pmix/tree/master/contrib/perf_tools
The page has the building and running instructions.
In the "run
Hi Gilles,
> You need to
> configure --with-pmi ...
Originally I specified the flag "--with-pmi" but looked at the output of slurm
...
version 16.05 or later: you can use SLURM's PMIx support. This
requires that you configure and build SLURM --with-pmix.
..
I recompiled with flag --with
Did you configure Slurm to use PMIx? If so, then you simply need to set the
"--mpi=pmix" or "--mpi=pmix_v2" (depending on which version of PMIx you used)
flag on your srun cmd line so it knows to use it.
If not (and you can't fix it), then you have to explicitly configure OMPI to
use Slurm's le
Hi,
You need to
configure --with-pmi ...
Cheers,
Gilles
On August 8, 2019, at 11:28 PM, Jing Gong via users
wrote:
Hi,
Recently our Slurm system has been upgraded to 19.0.5. I tried to recompile
openmpi v3.0 due to the bug reported in
https://bugs.schedmd.com/show_bug.cgi?id=6993
Hi,
Recently our Slurm system has been upgraded to 19.0.5. I tried to recompile
openmpi v3.0 due to the bug reported in
https://bugs.schedmd.com/show_bug.cgi?id=6993
The configure flags are:
$./configure --enable-shared --enable-static --with-slurm --with-pmix
and the output of ompi_info
