[OMPI users] error in mpi processes: openmpi-3.0

essfully, but am not able to aggregate error messages, and not able to guarantee that all other processes were killed!* I'm not sure what is causing this crash. Please help me out. Thank you *-- * Abhisek Mondal *Senior Research Fellow* *Structural Biology and Bioinformatics Division*

Re: [OMPI users] can not compile Openmpi-3.0

Thanks a lot. It worked very nicely for me. On Tue, Apr 3, 2018 at 12:54 PM, Gilles Gouaillardet wrote: > In that case, you need to > > configure --with-cuda=/usr/local/cuda-8.0 > > > Cheers, > > > Gilles > > > On 4/3/2018 4:12 PM, abhisek Mondal wrote: >

Re: [OMPI users] can not compile Openmpi-3.0

I have cuda installed in /usr/local/cuda-8.0. On Tue, Apr 3, 2018 at 12:37 PM, Gilles Gouaillardet wrote: > Did you install CUDA and where ? > > > On 4/3/2018 3:51 PM, abhisek Mondal wrote: > >> Thanks a lot. Installing the headers worked like a charm ! >> >> I

Re: [OMPI users] can not compile Openmpi-3.0

nel-headers is required too > > > Cheers, > > > Gilles > > > On 4/3/2018 2:28 PM, abhisek Mondal wrote: > >> Hello, >> >> Installing glibc moved the installation little bit but again stuck at >> sanity check. >> Location of

Re: [OMPI users] can not compile Openmpi-3.0

ilation terminated. > configure:6632: $? = 1 > configure:6639: ./conftest > ../configure: line 6641: ./conftest: No such file or directory > configure:6643: $? = 127 > > > at the very least, you need to install the glibc-headers package > > > Cheers, > > > Gille

Re: [OMPI users] can not compile Openmpi-3.0

details I had installed openmpi-3.0 before and removed it for some reason. While reinstalling I'm getting this error. Is there any thing left during removing older installation that is creating problem ? On Tue, Apr 3, 2018 at 9:58 AM, abhisek Mondal wrote: > Actually this error is happeni

Re: [OMPI users] can not compile Openmpi-3.0

t; On Apr 2, 2018, at 10:06 PM, abhisek Mondal > wrote: > > Hi, > > I need some help regarding compiling Openmpi-3.0. I have perfectly working > C compiler, however, during configuration I'm keep getting this error: > > > *==

Re: [OMPI users] can not compile Openmpi-3.0

t; You might also want to double check you can compile *and* run a simple C > hello world program > > > Cheers, > > > Gilles > > > On 4/3/2018 1:06 PM, abhisek Mondal wrote: > >> Hi, >> >> I need some help regarding compiling Openmpi-3.0. I have per

[OMPI users] can not compile Openmpi-3.0

se `--host'.* *See `config.log' for more details* I do not know waht is cross compiling but how can I avoid this error ? Please help me out here. Thanks -- Abhisek Mondal *Senior Research Fellow* *Structural Biology and Bioinformatics Division* *CSIR-Indian Institute of Chemical Biolo

[OMPI users] issues installing openmpi-3.0.1

"CUDA support: no" ? Please help me out here. Thanks -- Abhisek Mondal *Senior Research Fellow* *Structural Biology and Bioinformatics Division* *CSIR-Indian Institute of Chemical Biology* *Kolkata 700032* *INDIA* ___ users mailing list u

[OMPI users] openmpi crashes for more than 1 MPI

arlier. Can't figure out what is wrong this time. Please help me out. Thank you. -- Abhisek Mondal *Senior Research Fellow* *Structural Biology and Bioinformatics Division* *CSIR-Indian Institute of Chemical Biology* *Kolkata 700032* *INDIA* ___

Re: [OMPI users] Fwd: MCA version error

then re-install the rpm > > > > Cheers, > > > > Gilles > > > > On Fri, Oct 13, 2017 at 10:49 PM, Gilles Gouaillardet > > wrote: > >> can you run ldd on your binary ? > >> i suspect it might not use the right Open

Re: [OMPI users] Fwd: MCA version error

crash ? > > please detail your environment and post all relevant error messages > > Cheers, > > Gilles > > On Fri, Oct 13, 2017 at 10:17 PM, abhisek Mondal > wrote: > > > > Hi, > > > > I have installed an openmpi using following command: > > yum ins

[OMPI users] MCA version error

Hi, I have installed an openmpi using following command: *yum install openmpi-1.10.0-10.el7* When I put *ompi_info* command it shows me that it is using MCAv.2.1. Is there any way I can use MCA2.0 ? My program is not working under MCA2.1. Please help me out here. Thank you -- Abhisek Mondal

[OMPI users] Fwd: MCA version error

Hi, I have installed an openmpi using following command: *yum install openmpi-1.10.0-10.el7* When I put *ompi_info* command it shows me that it is using MCAv.2.1. Is there any way I can use MCA2.0 ? My program is not working under MCA2.1. Please help me out here. Thank you. -- Abhisek

[OMPI users] job distribution issue

rash. Am I going wrong in this scenario ? A little advice would have been really great. Thank you. -- Abhisek Mondal *Research Fellow* *Structural Biology and Bioinformatics Division* *CSIR-Indian Institute of Chemical Biology* *Kolkata 700032* *INDIA* __

[OMPI users] pbs vs openmpi node allocation

How can I forward the allocated node name(by pbs) to *mpirun* command ? A little light on this matter would be really great. Thank you. -- Abhisek Mondal *Research Fellow* *Structural Biology and Bioinformatics* *Indian Institute of Chemical Biology* *Kolkata 700032* *INDIA*

Re: [OMPI users] having an issue with paralleling jobs

f known hosts.* * * Is it ok to conclude about both node usage ? On Sun, Aug 2, 2015 at 8:19 PM, Bennet Fauber wrote: > On Sun, Aug 2, 2015 at 10:47 AM, abhisek Mondal > wrote: > > Try > > /mpirun --hostfile myhostfile -np 32 hostname > __

Re: [OMPI users] having an issue with paralleling jobs

output... > > Cheers, > > Gilles > > On Sunday, August 2, 2015, abhisek Mondal wrote: > >> Jeff, Gilles >> >> Here's my scenario again when I tried something different: >> I've interactively booked 2 nodes(cx1015 and cx1016) and working in &g

Re: [OMPI users] having an issue with paralleling jobs

pbs to allocate 2 nodes and everything should run smoothly. > > at first, I recommend you run a non MPI application > /.../bin/mpirun hostname > and then nwchem > > if it still does not work, then run with verbose palm and post the output > > Cheets, > > Gilles > &

Re: [OMPI users] having an issue with paralleling jobs

multiple nodes with "hostfile" option, things are starting to crash. On Sun, Aug 2, 2015 at 5:02 PM, abhisek Mondal wrote: > HI, > I have tried using full paths for both of them. But stuck in the same > issue. > > On Sun, Aug 2, 2015 at 4:39 PM, Gilles Gouaillardet

Re: [OMPI users] having an issue with paralleling jobs

h mpirun and > nwchem ? > > > Cheers, > > Gilles > > On Sunday, August 2, 2015, abhisek Mondal wrote: > >> Yes, I have tried this and got following error: >> >> *mpirun was unable to launch the specified application as it could not >> find an executable:* &g

Re: [OMPI users] having an issue with paralleling jobs

gt; wrote: > Can you try running invoking mpirun with its full path instead ? > e.g. /usr/local/bin/mpirun instead of mpirun > > Cheers, > > Gilles > > On Sunday, August 2, 2015, abhisek Mondal wrote: > >> Here is the other details, >> >> a. The

Re: [OMPI users] having an issue with paralleling jobs

e job terminates > > > On Aug 1, 2015, at 12:22 PM, abhisek Mondal > wrote: > > I'm working on an openmpi enabled cluster. I'm trying to run a job with 2 > different nodes and 16 processors per nodes. > Using this command: > > *mpirun -np 32 --hostfile myhost

[OMPI users] having an issue with paralleling jobs

is getting terminated each time before job allocation happens as per desired way. So, it'll very nice if I get some suggestions regarding the facts I'm missing. Thank you -- Abhisek Mondal *Research Fellow* *Structural Biology and Bioinformatics* *Indian Institute of Chemical Biology* *Kolkata 700032* *INDIA*