Re: [OMPI users] "Warning :: opal_list_remove_item" with openmpi-2.1.0rc4

2017-03-22 Thread Gilles Gouaillardet
Roland, the easiest way is to use an external hwloc that is configured with --disable-nvml an other option is to hack the embedded hwloc configure.m4 and pass --disable-nvml to the embedded hwloc configure. note this requires you run autogen.sh and you hence needs recent autotools. i guess Open

Re: [OMPI users] "Warning :: opal_list_remove_item" with openmpi-2.1.0rc4

2017-03-22 Thread Roland Fehrenbacher
> "SJ" == Sylvain Jeaugey writes: SJ> If you installed CUDA libraries and includes in /usr, then it's SJ> not surprising hwloc finds them even without defining CFLAGS. Well, that's the place where distribution packages install to :) I don't think a build system

Re: [OMPI users] "Warning :: opal_list_remove_item" with openmpi-2.1.0rc4

2017-03-22 Thread Siegmar Gross
Hi Akshay, Would it possible for you to provide the source to reproduce the issue? Yes, I've appended the file. Kind regards Siegmar Thanks On Tue, Mar 21, 2017 at 9:52 AM, Sylvain Jeaugey > wrote: Hi Siegmar, I think this

Re: [OMPI users] "Warning :: opal_list_remove_item" with openmpi-2.1.0rc4

2017-03-21 Thread Sylvain Jeaugey
If you installed CUDA libraries and includes in /usr, then it's not surprising hwloc finds them even without defining CFLAGS. I'm just saying I think you won't get the error message if Open MPI finds CUDA but hwloc does not. On 03/21/2017 11:05 AM, Roland Fehrenbacher wrote: "SJ" == Sylvain

Re: [OMPI users] "Warning :: opal_list_remove_item" with openmpi-2.1.0rc4

2017-03-21 Thread Roland Fehrenbacher
> "SJ" == Sylvain Jeaugey writes: Hi Silvain, I get the "NVIDIA : ..." run-time error messages just by compiling with "--with-cuda=/usr": ./configure --prefix=${prefix} \ --mandir=${prefix}/share/man \ --infodir=${prefix}/share/info \

Re: [OMPI users] "Warning :: opal_list_remove_item" with openmpi-2.1.0rc4

2017-03-21 Thread Akshay Venkatesh
Hi Siegmar, Would it possible for you to provide the source to reproduce the issue? Thanks On Tue, Mar 21, 2017 at 9:52 AM, Sylvain Jeaugey wrote: > Hi Siegmar, > > I think this "NVIDIA : ..." error message comes from the fact that you add > CUDA includes in the C*FLAGS.

Re: [OMPI users] "Warning :: opal_list_remove_item" with openmpi-2.1.0rc4

2017-03-21 Thread Sylvain Jeaugey
Hi Siegmar, I think this "NVIDIA : ..." error message comes from the fact that you add CUDA includes in the C*FLAGS. If you just use --with-cuda, Open MPI will compile with CUDA support, but hwloc will not find CUDA and that will be fine. However, setting CUDA in CFLAGS will make hwloc find

[OMPI users] "Warning :: opal_list_remove_item" with openmpi-2.1.0rc4

2017-03-21 Thread Siegmar Gross
Hi, I have installed openmpi-2.1.0rc4 on my "SUSE Linux Enterprise Server 12.2 (x86_64)" with Sun C 5.14 and gcc-6.3.0. Sometimes I get once more a warning about a missing item for one of my small programs (it doesn't matter if I use my cc or gcc version). My gcc version also displays the