Everyone,
I just wanted to follow up on this, to help others, or possibly even a
future me, having problems compiling OpenMPI with the PGI compilers. I
did get it to work a few weeks ago, but I've been too busy to share my
solution here. I need to give a shout out to Matt Thompson for
Matt,
Thank you so much! I think you might have cracked the case for me. Yes,
I'm on Linux, and I just looked up siterc and userrc files in the PGI
userguide. I think I'm going to start with a userrc file, since I prefer
to minimize customization as much as possible, and to test without
Coming in near the end here. I've had "fun" with PGI + Open MPI + macOS
(and still haven't quite solved it, see:
https://www.mail-archive.com/users@lists.open-mpi.org//msg30865.html, still
unanswered!) The solution that PGI gave me, and which seems the magic sauce
on macOS is to use a siterc file
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Am 03.04.2017 um 23:07 schrieb Prentice Bisbal:
> FYI - the proposed 'here-doc' solution below didn't work for me, it produced
> an error. Neither did printf. When I used printf, only the first arg was
> passed along:
>
> #!/bin/bash
>
>
FYI - the proposed 'here-doc' solution below didn't work for me, it
produced an error. Neither did printf. When I used printf, only the
first arg was passed along:
#!/bin/bash
realcmd=/usr/pppl/pgi/17.3/linux86-64/17.3/bin/pgcc.real
echo "original args: $@"
newargs=$(printf -- "$@" | sed
A coworker came up with another idea that works, too:
newargs=sed s/-pthread//g <
Try
$ printf -- "-E" ...
On 04/03/2017 04:03 PM, Prentice Bisbal wrote:
Okay. the additional -E doesn't work,either. :(
Prentice Bisbal Lead Software Engineer Princeton Plasma Physics
Laboratory
Try
$ printf -- "-E" ...
On 04/03/2017 04:03 PM, Prentice Bisbal wrote:
Okay. the additional -E doesn't work,either. :(
Prentice Bisbal Lead Software Engineer Princeton Plasma Physics
Laboratory http://www.pppl.gov
On 04/03/2017 04:01 PM, Prentice Bisbal wrote:
Nevermind. A coworker helped
Okay. the additional -E doesn't work,either. :(
Prentice Bisbal Lead Software Engineer Princeton Plasma Physics
Laboratory http://www.pppl.gov
On 04/03/2017 04:01 PM, Prentice Bisbal wrote:
Nevermind. A coworker helped me figure this one out. Echo is treating
the '-E' as an argument to echo
Nevermind. A coworker helped me figure this one out. Echo is treating
the '-E' as an argument to echo and interpreting it instead of passing
it to sed. Since that's used by the configure tests, that's a bit of a
problem, Just adding another -E before $@, should fix the problem.
Prentice
On
I've decided to work around this problem by creating a wrapper script
for pgcc that strips away the -pthread argument, but my sed expression
works on the command-line, but not in the script. I'm essentially
reproducing the workaround from
To be thorough couldn't one replace -pthread in the slurm .la files with
-lpthread? I ran into this last week and this was the solution I was
thinking about implementing. Having said that, I can't think of a
situation in which the -pthread/-lpthread argument would be required
other than
We build slurm with GCC, drop the -pthread arg in the .la files, and
have never seen any problems related to that. And we do build quite a
lot of code. And lots of versions of OpenMPI with multiple different
compilers (and versions).
On 04/03/2017 04:51 PM, Prentice Bisbal wrote:
> This is the
This is the second suggestion to rebuild Slurm
The other from Åke Sandgren, who recommended this:
This usually comes from slurm, so we always do
perl -pi -e 's/-pthread//'/lap/slurm/${version}/lib/libpmi.la
/lap/slurm/${version}/lib/libslurm.la
when installing a new slurm version. Thus no
Hi,
The -pthread flag is likely pulled by libtool from the slurm libmpi.la
and/or libslurm.la
Workarounds are
- rebuild slurm with PGI
- remove the .la files (*.so and/or *.a are enough)
- wrap the PGI compiler to ignore the -pthread option
Hope this helps
Gilles
On Monday, April 3, 2017,
This usually comes from slurm, so we always do
perl -pi -e 's/-pthread//' /lap/slurm/${version}/lib/libpmi.la
/lap/slurm/${version}/lib/libslurm.la
when installing a new slurm version. Thus no need for a fakepg wrapper.
On 04/03/2017 04:20 PM, Prentice Bisbal wrote:
> Greeting Open MPI users!
Greeting Open MPI users! After being off this list for several years,
I'm back! And I need help:
I'm trying to compile OpenMPI 1.10.3 with the PGI compilers, version
17.3. I'm using the following configure options:
./configure \
--prefix=/usr/pppl/pgi/17.3-pkgs/openmpi-1.10.3 \
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