The Dell
> company only asked us to use openmpi-mpirun as a wrapper script.
>
> Cheers,
>
> Min Zhu
>
>
> -Original Message-
> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On
> Behalf Of Jeroen Kleijer
> Sent: 17 December 2009 16:4
eijer
Sent: 17 December 2009 16:49
To: Open MPI Users
Subject: Re: [OMPI users] About openmpi-mpirun
Hi Min,
Sorry for the mixup but it's been a while since I've actually used LSF.
I've had a look at my notes and to use mpirun with LSF you should give
something like this:
b
file
> -s: -c: line 0: unexpected EOF while looking for matching `''
> -s: -c: line 1: syntax error: unexpected end of file
> -s: -c: line 0: unexpected EOF while looking for matching `''
> -s: -c: line 1: syntax error: unexpected end of file
> --
Subject: Re: [OMPI users] About openmpi-mpirun
On Thu, 2009-12-17 at 14:40 +, Min Zhu wrote:
> Here is the content of openmpi-mpirun file, so maybe something needs
to
> be changed?
> if [ x"${LSB_JOBFILENAME}" = x -o x"${LSB_HOSTS}" = x ]; then
> usag
> unlimited
> unlimited
> unlimited
> unlimited
> unlimited
> unlimited
>
>
> PS:
>
> Read file for stderr output of this job.
>
> --
>
> Thanks,
>
> Min Zhu
>
>
> -Original Message
On Thu, 2009-12-17 at 14:40 +, Min Zhu wrote:
> Here is the content of openmpi-mpirun file, so maybe something needs to
> be changed?
> if [ x"${LSB_JOBFILENAME}" = x -o x"${LSB_HOSTS}" = x ]; then
> usage
> exit -1
> fi
>
> MYARGS=$*
Shouldn't this be MYARGS=$@ It'll change the way
-----------
>
> Thanks,
>
> Min Zhu
>
>
> -Original Message-
> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On
> Behalf Of Jeroen Kleijer
> Sent: 17 December 2009 16:05
> To: Open MPI Users
> Subject: Re: [OMPI
lto:users-boun...@open-mpi.org] On Behalf
Of Jeroen Kleijer
Sent: 17 December 2009 16:05
To: Open MPI Users
Subject: Re: [OMPI users] About openmpi-mpirun
Hi Min
Did you get any type of error message in the ERR or OUT files?
I don't have mpirun installed in the environment at the moment but
giv
ed; ./wrf.exe ' " and wrf.exe
> not executed.
>
> Cheers,
>
> Min Zhu
>
> -Original Message-
> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On
> Behalf Of Jeroen Kleijer
> Sent: 17 December 2009 15:34
> To: Open MPI Users
n-mpi.org] On Behalf
Of Jeroen Kleijer
Sent: 17 December 2009 15:34
To: Open MPI Users
Subject: Re: [OMPI users] About openmpi-mpirun
It's just that the "'s on the command line get parsed by LSF / bash
(or whatever shell you use)
If you wish to use it without the script you can giv
hu wrote:
> Hi, Jeff,
>
> Your script method works for me. Thank you very much,
>
> Cheers,
>
> Min Zhu
>
>
> -Original Message-
> From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On
> Behalf Of Jeff Squyres
> Sent: 17 December 2009
t
> tr '\/ ' '\r\n' < ${MACHFILE}.lst > ${MACHFILE}
>
> MPIRUN=`which --skip-alias mpirun`
> ${MPIRUN} -x LD_LIBRARY_PATH -machinefile ${MACHFILE} ${MYARGS}
>
> exit $?
>
> --
>
>
> Cheers,
>
>
x27;\/ ' '\r\n' < ${MACHFILE}.lst > ${MACHFILE}
>
> MPIRUN=`which --skip-alias mpirun`
> ${MPIRUN} -x LD_LIBRARY_PATH -machinefile ${MACHFILE} ${MYARGS}
>
> exit $?
>
> --
>
>
> Cheers,
>
>
MPIRUN=`which --skip-alias mpirun`
${MPIRUN} -x LD_LIBRARY_PATH -machinefile ${MACHFILE} ${MYARGS}
exit $?
--
Cheers,
Min Zhu
-Original Message-
From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On
Behalf Of Jeff Squyres
Sent: 17 D
On Dec 17, 2009, at 9:15 AM, Min Zhu wrote:
> Thanks for your reply. Yes, your mpirun command works for me. But I need to
> use bsub job scheduler. I wonder why
> bsub -e ERR -o OUT -n 16 openmpi-mpirun "/bin/sh -c ulimit -s unlimited;
> ./wrf.exe" doesn't work.
Try with different quoting...?
..@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf
Of Romaric David
Sent: 17 December 2009 13:58
To: Open MPI Users
Subject: Re: [OMPI users] About openmpi-mpirun
Min Zhu a écrit :
> Hi,
>
> I excuted
> bsub -e ERR -o OUT -n 16 openmpi-mpirun "/bin/sh -c ulimit -s u
Min Zhu a écrit :
Hi,
I excuted
bsub -e ERR -o OUT -n 16 openmpi-mpirun "/bin/sh -c ulimit -s unlimited; ./wrf.exe"
Hello,
Here we use :
mpirun /bin/tcsh -c " limit stacksize unlimited ; /full/path/to/wrf.exe"
Regards,
R. David
d file for stderr output of this job.
-
Thanks,
Min Zhu
-Original Message-
From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf
Of Romaric David
Sent: 17 December 2009 13:17
To: Open MPI Users
Subject: Re: [OMPI users] About openmpi-mpirun
Min Zhu a écrit :
>
Min Zhu a écrit :
Dear all,
I have a question to ask you. If I issue a command "bsub -n 16
openmpi-mpirun ./wrf.exe" to my 128-core (16 nodes)cluster, the job
failed to run due to stacksize problem. Openmpi-mpirun is a wrapper
script written by Platform. If I want to add '/bin/sh -c ulimit -s
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