Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-02 Thread Ralph Castain
On Mar 2, 2012, at 3:23 PM, Yiguang Yan wrote: > It turns out that the "-x" option should be put on each line of the app file > if app file is used. > > > So from tests (a),(b),(c), if I am using app file, the PATH and > LD_LIBRARY_PATH are only passed to slave node > when the "-x" is set o

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-02 Thread Yiguang Yan
It turns out that the "-x" option should be put on each line of the app file if app file is used. OK, now test results on our cluster, in case this may be useful to some Open MPI users(Open MPI 1.4.3 used on my system): (1) If I run mpirun command from command line as Jeff's foo test, everythi

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-02 Thread Jeffrey Squyres
On Mar 2, 2012, at 2:50 PM, Ralph Castain wrote: >> Ralph and I just had a phone conversation about this. We consider it a bug >> -- you shouldn't need to put --prefix in the app file. Meaning: --prefix is >> currently being ignored if you use an app file (and therefore you have to >> put --p

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-02 Thread Ralph Castain
On Mar 2, 2012, at 10:50 AM, Jeffrey Squyres wrote: > On Mar 2, 2012, at 9:48 AM, Yiguang Yan wrote: > >> (All with the same test script test.bash I post in my previous emails, so >> run with app file fed to mpirun command.) >> >> (1) If I put the --prefix in the app file, on each line of it,

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-02 Thread Jeffrey Squyres
On Mar 2, 2012, at 9:48 AM, Yiguang Yan wrote: > (All with the same test script test.bash I post in my previous emails, so run > with app file fed to mpirun command.) > > (1) If I put the --prefix in the app file, on each line of it, it works fine > as Jeff said. > > (2) Since in the manual, i

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-02 Thread Ralph Castain
We'll take a look at the prefix behavior. As to the btl, you can always just force it: for example, -mca btl sm,self,openib would restrict it to shared memory and IB. On Mar 2, 2012, at 7:48 AM, Yiguang Yan wrote: > Hi Jeff, Ralph-- > > Please let me follow the thread, here are what I observe

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-02 Thread Yiguang Yan
Hi Jeff, Ralph-- Please let me follow the thread, here are what I observed: (All with the same test script test.bash I post in my previous emails, so run with app file fed to mpirun command.) (1) If I put the --prefix in the app file, on each line of it, it works fine as Jeff said. (2) Since

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-01 Thread Ralph Castain
I don't know - I didn't write the app file code, and I've never seen anything defining its behavior. So I guess you could say it is intended - or not! :-/ On Mar 1, 2012, at 2:53 PM, Jeffrey Squyres wrote: > Actually, I should say that I discovered that if you put --prefix on each > line of th

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-01 Thread Yiguang Yan
> Actually, I should say that I discovered that if you put --prefix on each > line of the app context file, then the first > case (running the app context file) works fine; it adheres to the --prefix > behavior. Yes, I confirmed this on our cluster. It works with --prefix on each line of the

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-01 Thread Jeffrey Squyres
Actually, I should say that I discovered that if you put --prefix on each line of the app context file, then the first case (running the app context file) works fine; it adheres to the --prefix behavior. Ralph: is this intended behavior? (I don't know if I have an opinion either way) On Mar

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-01 Thread Jeffrey Squyres
I see the problem. It looks like the use of the app context file is triggering different behavior, and that behavior is erasing the use of --prefix. If I replace the app context file with a complete command line, it works and the --prefix behavior is observed. Specifically: $mpirunfile $mcap

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-01 Thread Yiguang Yan
Hi Ralph, Thanks, here is what I did as suggested by Jeff: > What did this command line look like? Can you provide the configure line as > well? As in my previous post, the script as following: (1) debug messages: >>> yiguang@gulftown testdmp]$ ./test.bash [gulftown:28340] mca: base: componen

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-01 Thread Ralph Castain
What did this command line look like? Can you provide the configure line as well? On Mar 1, 2012, at 12:46 PM, Yiguang Yan wrote: > Hi Jeff, > > Here I made a developer build, and then got the following message > with plm_base_verbose: > > [gulftown:28340] mca: base: components_open: Lo

Re: [OMPI users] orted daemon not found! --- environment not passed to slave nodes

2012-03-01 Thread Yiguang Yan
Hi Jeff, Here I made a developer build, and then got the following message with plm_base_verbose: >>> [gulftown:28340] mca: base: components_open: Looking for plm components [gulftown:28340] mca: base: components_open: opening plm components [gulftown:28340] mca: base: components_open: found l