Hello Sunitha,
If you have admin privileges on this system add library path to
/etc/ld.so.conf
eg: echo "/home/sunitap/soft/openmpi/lib" >> /etc/ld.so.conf
ldconfig
Rangam
From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] On Behalf Of
sun...
Try
env | grep LD_LIBRARY_PATH
Does it show /home/sunitap/soft/openmpi/lib in your library path.
I have a similar installation. This is how my LD_LIBRARY_PATH looks.
LD_LIBRARY_PATH=/lustre/work/apps/gromacs-testgar/lib:/lustre/work/apps/gromacs-mkl/lib:/lustre/work/apps/openmpi-testgar/lib:/o
Hello Tushar,
Have you tried supplying the full path of the executable just to check ?
Rangam
From: users-boun...@open-mpi.org [users-boun...@open-mpi.org] On Behalf Of
Tushar Andriyas [thugnomic...@gmail.com]
Sent: Wednesday, November 17, 2010 8:49 PM
To:
`date +%y%m%d%H%M`
I have tried both mpirun and mpiexec but nothing seems to work.
Tushar
On Wed, Nov 17, 2010 at 8:12 PM, Addepalli, Srirangam V
mailto:srirangam.v.addepa...@ttu.edu>> wrote:
Hello Tushar,
Have you tried supplying the full path of the executable just to check ?
Rangam
in the run. So, does that mean that the exe
is auto mounted ? What should I do next?
Tushar
On Fri, Nov 19, 2010 at 10:05 AM, Addepalli, Srirangam V
mailto:srirangam.v.addepa...@ttu.edu>> wrote:
Hello Tushar,
Try the following script.
#!/bin/sh
#PBS -V
#PBS -q wasatch
#PBS -N SWMF
#PBS -l n
atch script and the error file comes out empty and the output
file has /home/A00945081/SWM_v2.3/run/SWMF.exe (WHEN RUN ON A SINGLE MACHINE)
and the same with multiple machines in the run. So, does that mean that the exe
is auto mounted ? What should I do next?
Tushar
On Fri, Nov 19, 2010
12:11 PM
To: Open MPI Users
Subject: Re: [OMPI users] Unable to find the following executable
Rangam,
It does not want to run at all. Attached is the log file from the batch file
run u sent.
On Sat, Nov 20, 2010 at 10:32 AM, Addepalli, Srirangam V
mailto:srirangam.v.addepa...@ttu.edu>>
MCA sds: slurm (MCA v1.0, API v1.0, Component v1.2.7)
How do you invoke tcp? I no for sure that the launcher on the clusters is
torque.
Tushar
On Sat, Nov 20, 2010 at 11:28 AM, Addepalli, Srirangam V
mailto:srirangam.v.addepa...@ttu.edu>> wrote:
Hello Tushar,
Can you send me the outp
Hello Thorsten
What type of IB interface do you have (qlogic ?). I often run into simarl
issue when running 256 core jobs . It mostly happens for me as i hit a node
with IB issues.
nothing related to openmpi. If you are using qlogic PSM try using ping-pong
ex to check availability of all node
Hello Chai,
Try copying the libraries to your localnode to /usr/local/ and rebuild on the
slave nodes.
Just tested and it appears to work.
Rangam
-Original Message-
From: users-boun...@open-mpi.org [mailto:users-boun...@open-mpi.org] On Behalf
Of Chaitanya Krishna
Sent: Sunday, December
This usually means you library path is not updated to find mpilibrarues. You
can fix this many ways, basic two steps are
1. Identify location of your libraries (use locate, find )
2. Add it to your Library path. ( export LD_LIBRARY_PATH or make changes in
.bashrc or /etc/ld.so.conf)
Rangam
_
I am trying to test orte-checkpoint with a MPI JOB. It how ever hangs for all
jobs. This is how i submit the job is started
mpirun -np 8 -mca ft-enable cr /apps/nwchem-5.1.1/bin/LINUX64/nwchem siosi6.nw
>From another terminal i try the orte-checkpoint
ompi-checkpoint -v --term 9338
[compute-19-
Hello All.
I am trying to run a parallel application that should use one core less than
the no of cores that are available on the system. Are there any flags that i
can use to specify this.
i tried using the following syntax with machinefile
openmpi-1.4-BM/bin/mpirun -np 14 -npernode 7 -machine
: Open MPI Users
Subject: Re: [OMPI users] Option to use only 7 cores out of 8 on each node
When you say "it fails", what do you mean? That it doesn't run at all, or that
it still fills each node, or...?
On Tue, Mar 2, 2010 at 9:49 AM, Addepalli, Srirangam V
mailto:srirangam.v.ad
: Open MPI Users
Subject: Re: [OMPI users] Option to use only 7 cores out of 8 on each node
Am 02.03.2010 um 19:26 schrieb Eugene Loh:
> Eugene Loh wrote:
>
>> Addepalli, Srirangam V wrote:
>>
>>> i tried using the following syntax with machinefile
>>> mp
Yes We have seen this behavior too.
>>Another behavior I have seen is that one MPI process starts to show different
>>elapsed time than its peers. Is it because checkpoint happened on behalf of
>>this process?
R
From: users-boun...@open-mpi.org [users-b
Hello All.
I am trying to checkpoint a mpi application that has been started using the
follwong mpirun command
mpirun -am ft-enable-cr -np 8 pw.x < Ge46.pw.in > Ge46.ph.out
ompi-checkpoint 31396 ( Works) How ever when i try to terminate the process
ompi-checkpoint --term 31396 it never finis
Hello Matthew,
Not sure it it helps but I am guessing that
module load openmpi (in bash script) is updating variables to RANGER openmpi
installation. Try removing this line in your script file and resubmit your job,
also
#$ -V in the submission script exports env variables from your current
/labs/lacey
Personal Website: http://macmanes.com/
On Mon, Apr 26, 2010 at 08:14, Addepalli, Srirangam V
mailto:srirangam.v.addepa...@ttu.edu>> wrote:
Hello Matthew,
Not sure it it helps but I am guessing that
module load openmpi (in bash script) is updating variables to RANGER openmpi
HelloRichard,
Yes NWCHEM can be run on IB using 1.4.1. If you have built openmpi with IB
support.
Note: If your IB cards are qlogic you need to compile NWCHEM with MPI-SPAWN.
Rangam
Settings for my Build with MPI-SPAWN:
export ARMCI_NETWORK=MPI-SPAWN
export IB_HOME=/usr
export IB_INCLUDE=/u
Hello,
ldd `which mdrun_mpi`
should give you which libraries the binary is looking for. What does the above
command do for your build.
I had a user who had a serial mdrun in his path and it did the same.
Rangam
From: users-boun...@open-mpi.org [users
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