Re: [Pw_forum] kp

2016-11-28 Thread ashkan shekaari
Dear Giovanni, Thank you so much for your explanatory response. So, as I understood, there is no way to calculate band structure for a molecule and this is nonsensical. Is it true? On Nov 29, 2016 1:46 AM, wrote: > Just to add that plain wave is not a good approximation to reproduce > molecular

Re: [Pw_forum] kp

2016-11-28 Thread meisam . a63
Just to add that plain wave is not a good approximation to reproduce molecular orbitals. Mortaza A PhD of Physics Ulm University, Germany > On 28 Nov 2016, at 21:43, Giovanni Cantele > wrote: > > if you try to ask the question: "what the k-point mesh is for?" you can > easily understand >

Re: [Pw_forum] spin-orbit interaction + pressure

2016-11-28 Thread Maksim Markov
Dear Maxim, The results depend on pseudopotential you use. For example, you might have different exchange-correlation parts or include (or not include) semi-core states in valence. In this case it is not surprising that you have different results. Best regards, Maksim Markov, Doctorant Laboratoi

Re: [Pw_forum] Question regarding QE-GPU 6 availability

2016-11-28 Thread Filippo Spiga
On Nov 28, 2016, at 4:16 PM, Josue Itsman Clavijo Penagos wrote: > I'd like to openly answer if the GPU feature is already available for QE v. 6 > , since I'm testing that QE version and it seems to me the GPU tarball its > located nowhere among the installation packages. No, it is not. Too ea

Re: [Pw_forum] kp

2016-11-28 Thread Giovanni Cantele
if you try to ask the question: "what the k-point mesh is for?" you can easily understand that a k-point mesh is for the Brillouin zone (BZ) sampling, that is, perform sums over k-points that approximate, with a required level of accuracy, the integral over the whole BZ. This is because in a cry

[Pw_forum] B_field per Rydberg

2016-11-28 Thread Mems Aghaee
Hiplz look at the end of my scf.out:why magnetic field is per Rydberg?and how can i convert that to Tesla?.total energy = -253.04759495 Ry Harris-Foulkes estimate = -253.04758781 Ry estimated scf accuracy < 0.0452 RyThe total energy is the sum of the following terms:one-electron contrib

Re: [Pw_forum] Running in Parallel

2016-11-28 Thread Mofrad, Amir Mehdi (MU-Student)
I used to run the older version of QE in parallel on a cluster using SLURM with the following command in job script and it worked fine. mpirun pw.x -inp $INPUTFILE However, after I compiled it to the newer version 6, apparently the simulation gets frozen (it dumps some informatio

Re: [Pw_forum] spin-orbit interaction + pressure

2016-11-28 Thread Максим Арсентьев
Dear Lorenzo, I have a question too. How to get accurate total energy calculations for phase diagrams? I have read 2 papers from respective journals dealing with the same object but having (!) different results. In my calls I have result which is medium between these two papers. Thank you, Maxim.

[Pw_forum] kp

2016-11-28 Thread ashkan shekaari
Dear experts, Is it necessary using kpoint mesh when we are dealing with molecules? In the case of a molecule in cubic vacuum, what path in BZ should be selected? *--* *Regards,* *Ashkan Shekaari* *Plasma Physics Research Center* *Science and Research Branch* *I A U, 14778-93855 Tehran, Iran.* __

Re: [Pw_forum] Question regarding QE-GPU 6 availability

2016-11-28 Thread Josue Itsman Clavijo Penagos
Thank you very much, Prof. Giannozzi. I'll look that link you kindly provide. -- *Prof. Josué Clavijo, PhD* *Cristiano, nacido de nuevo* Profesor Asistente Universidad Nacional de Colombia Sede Bogotá ___ Pw_forum mailing list Pw_forum@pwscf.org http:/

Re: [Pw_forum] Question regarding QE-GPU 6 availability

2016-11-28 Thread Paolo Giannozzi
On Mon, Nov 28, 2016 at 5:16 PM, Josue Itsman Clavijo Penagos < jiclavi...@unal.edu.co> wrote: > > Also, just to clarify: Is the Adaptively Compressed Operator for EXX > activated just by compiling with the -D__EXX_ACE flag added inside > make.sys after the ./configure step? > inside "make.inc"

Re: [Pw_forum] spin-orbit interaction + pressure

2016-11-28 Thread Andrey Chibisov
Dear Dr. Lorenzo, Thanks a lot for your comments. 29.11.2016, 00:22, "Lorenzo Paulatto" : > On Monday, November 28, 2016 11:45:01 PM CET Andrey Chibisov wrote: >>  Can I use the spin-orbit interaction with pressure? > > You can, because the pressur estill exists, but it cannot be computed, hence >

[Pw_forum] Question regarding QE-GPU 6 availability

2016-11-28 Thread Josue Itsman Clavijo Penagos
Dear all, I'd like to openly answer if the GPU feature is already available for QE v. 6 , since I'm testing that QE version and it seems to me the GPU tarball its located nowhere among the installation packages. Also, just to clarify: Is the Adaptively Compressed Operator for EXX activated just

Re: [Pw_forum] BLYP

2016-11-28 Thread Paolo Giannozzi
Sorry, I meant: input_dft='b3lyp', not input_dft=b3lyp On Mon, Nov 28, 2016 at 5:01 PM, Paolo Giannozzi wrote: > input_dft='blyp', not input_dft=blyp. The best choice would be to use > pseudopotentials caomputed for B3LYP, but since there aren't any (not that > I know), BLYP pseudopotentials is

Re: [Pw_forum] Parallelization of version of QE (v. 6. 0) on cluster

2016-11-28 Thread Paolo Giannozzi
On Mon, Nov 28, 2016 at 4:48 PM, Ullah, Habib wrote: We recently installed QE (v.6.0) on our cluster, but it is in serial not > parallel. Our previous version (QE 5.1.1) was successfully installed in > parallel, but don’t know why this one is not parallelizing. > because "configure" does not rec

Re: [Pw_forum] BLYP

2016-11-28 Thread Paolo Giannozzi
input_dft='blyp', not input_dft=blyp. The best choice would be to use pseudopotentials caomputed for B3LYP, but since there aren't any (not that I know), BLYP pseudopotentials is the second best choice. Paolo On Mon, Nov 28, 2016 at 3:21 PM, ashkan shekaari wrote: > Dear experts, > > Is it sens

[Pw_forum] Parallelization of version of QE (v. 6. 0) on cluster

2016-11-28 Thread Ullah, Habib
Dear All, We recently installed QE (v.6.0) on our cluster, but it is in serial not parallel. Our previous version (QE 5.1.1) was successfully installed in parallel, but don’t know why this one is not parallelizing. I will be very thankful if someone can guide me, to parallel it properly. These

Re: [Pw_forum] spin-orbit interaction + pressure

2016-11-28 Thread Lorenzo Paulatto
On Monday, November 28, 2016 11:45:01 PM CET Andrey Chibisov wrote: > Can I use the spin-orbit interaction with pressure? You can, because the pressur estill exists, but it cannot be computed, hence the following limitations apply: 1. you won't be able to know how much pressure you are actually a

[Pw_forum] BLYP

2016-11-28 Thread ashkan shekaari
Dear experts, Is it sensible to use input_dft=b3lyp with blyp pseudopotentials? *--* *Regards,* *Ashkan Shekaari* *Plasma Physics Research Center* *Science and Research Branch* *I A U, 14778-93855 Tehran, Iran.* ___ Pw_forum mailing list Pw_forum@pwscf.o

Re: [Pw_forum] error *** No rule to make target `../flib/ptools.a',

2016-11-28 Thread Bramha Pandey
Thank You Prof. Paolo. Now it is working by generating make.inc file using ./configuration. -- Regards Dr. Bramha P Pandey Asstt. Prof. ECE Deptt. GLA University, Mathura (U.P) India-281406. On Sun, Nov 27, 2016 at 7:43 PM, Paolo Giannozzi wrote: > On Sun, Nov 27, 2016 at 6:38 AM, Bramha Pande

Re: [Pw_forum] spin-orbit interaction + pressure

2016-11-28 Thread Максим Арсентьев
of course, this is like usual geom. opt. but with pressure 2016-11-28 17:45 GMT+04:00 Andrey Chibisov : > Dear Colleagues, > I want to apply a pressure to the silicene. The system relaxes, but the > pressure tensor is not printed. > There is a message: > Message from routine stres: > noncollin

[Pw_forum] spin-orbit interaction + pressure

2016-11-28 Thread Andrey Chibisov
Dear Colleagues, I want to apply a pressure to the silicene. The system relaxes, but the pressure tensor is not printed. There is a message: Message from routine stres: noncollinear stress + GGA not implemented Can I use the spin-orbit interaction with pressure? -- Best regards, Andrey Chibiso

[Pw_forum] problem using "ibrav" in cp.x

2016-11-28 Thread 周凯旋
Dear all! Before I run Cp.X, I have set the symmetry of crystal structure. So when I run Cp.X ,is it necessary to set the "ibrav"? If I set the "ibrav", I always get an error. %%% Error in routine ortho (1): ortho went bananas %

Re: [Pw_forum] binding energy

2016-11-28 Thread Giovanni Cantele
1) maybe providing at least the inputs of the total, species1 and species2 runs would help 2) is E_{species1} the energy of the whole cluster without the ligand? 3) what are the cell sizes and k-point grids used in the three calculations? 4) please kindly provide also your affiliation in posti

[Pw_forum] binding energy

2016-11-28 Thread Moosavi Seyed Mohamad
Hi I calculated the binding energy of a cluster (species1) with a ligand(species 2) with this formula: E_{total} - E_{species1} - E_{species2} I run PAW in a cubic cell large enough to avoid periodicity effects in the calculations (10 angstrom each side). The geometry converges very well to a 2

[Pw_forum] problem using 'vc-relax'

2016-11-28 Thread Ankush Bharti
hi while running a calculation with 'vc-relax' following error appears %% task # 0 from scale_h : error # 1 Not enough space allocated for radial FFT: try restarting with a larger cell_fac

[Pw_forum] binding energy

2016-11-28 Thread Moosavi Seyed Mohamad
?Hi I calculated the binding energy of a cluster (species1) with a ligand(species 2) with this formula: E_{total} - E_{species1} - E_{species2} I run PAW in a cubic cell large enough to avoid periodicity effects in the calculations (10 angstrom each side). The geometry converges very well t