I had carefully checked this mailing list and I had found several
topic related to the same issue - QE generates multiple atoms for
atoms in special positions.
Not solved in any answer.
What I mean:
General position: x,y,z crystallographic position, atom not on a
symmetry element (e.g. for sp
Hi
which version of the code are you using ?
with qe-6.6 using your parameters I got two positions
site n. atom positions (alat units)
1 Zn tau( 1) = ( 0.4873906 2.5406690 1.4472625 )
2 Zn tau( 2) = ( 0.3343454 0.
Hi Pietro
I use 6.4.1 (the latest one for witch Windows binary are available
for download from QE listed WWW).
The whole non functional input follows. If you can check this, it
will be very helpful.
Michal
&CONTROL
calculation = 'scf'
etot_conv_thr = 1.46d-03
forc_conv_thr
It tells me atom 7 and 150 overlap, 7 should be
O -0.503 0.4513 0.3517
As for 150 I don’t know, not very easy to spot in a short time.
Pietro
Sent from Mail for Windows 10
From: Michal Husak
Sent: Thursday, November 12, 2020 12:19 PM
To: Quantum ESPRESSO users Forum
Subject: Re: [QE-users] In
On Thu, Nov 12, 2020 at 12:35 PM Pietro Delugas wrote:
> It tells me atom 7 and 150 overlap, 7 should be
>
> O -0.503 0.4513 0.3517
>
well, no, 7 and 150 in the list of all atoms, not of Wyckoff positions.
Atom 7 is n.4 in the list:
O -0.1486 0.54916 0.09311
atom 150 is n. 41:
O -0.1486 -0.
Dear all,
Last 11th of september I sent a similar question, but the answer,
provided by Paolo Giannozzi, did not clarify much. I can say that in
that occasion I was using qe-6.5. Should I use qe -6.6?
Regards,
José C. Conesa
El 12/11/2020 a las 11:30, Pietro Delugas escribió:
Hi
which v
Problem solved on my side ...
I apology for disturbing :-).
The CSD Mercury software added to the CIF file
from some reason some symmetry generated atoms ...
It probably try to save the whole molecule (1/2
generated by mirror operation) = create incorrect
cif with duplicated atoms positions ...
Dear C. Conesa
I was afraid I am faced exactly with the same
problem you mentioned in your contribution ...
But had identified 2 problems on my side instead :
1) I forget to use uniqueb = .true. => incorrect
identification of special positions
2) after correcting mistake 1) I had used
incorr
Dear Dr. Kumar,
I guess dangling bonds are written about in DFT textbooks of the
physicists' style
(in quantum chemistry, ie. clusters rather than crystals, it is less
of a problem).
The typical problem is that you cut chemical bonds when cleave the
crystal (to get a slab).
In case of bonds origi
Dear Tamas and Kumar
only to add a few words to the (very pertinent) Tamas' reply:
1) Semiconductor surfaces can undergoes very complex reconstruction
patterns (the 7x7 Si(111) reconstruction being likely the most famous
case). You will not find complex reconstructions by simply cutting and
Thankyou for your explanation regarding Dangling bond.
I have one more question. Is it sufficient to remove one atom Cd (or S)
form CdS crystal or also i need to modify/regenerate pseudo-potential file
to calculate properties related to Dangling bond during DFT simulation?
thanks
Dr. Sunil Kumar
P
I have carried out some dft simulations as attached file.
Dr. Sunil Kumar
Ph.D (Chemical Engg. IIT Delhi)
M.Tech (Chemical Engg. IIT Delhi)
B.Tech (Chemical Engg. IET-CSJMU Kanpur)
Scientist-C and Assistant Professor
CSIR-National Metallurgical Laboratory Jamshedpur-831007
http://www.nmlindia.org/
On Thu, Nov 12, 2020 at 1:34 PM José Carlos Conesa Cegarra <
jccon...@icp.csic.es> wrote:
Last 11th of september I sent a similar question, but the answer, provided
> by Paolo Giannozzi, did not clarify much. I can say that in that occasion I
> was using qe-6.5. Should I use qe -6.6?
>
not necess
Dear Kumar
In your attached file there is a correct and fully periodic CdS
zincblend structure. I don't see any dangling bond.
>> I have one more question. Is it sufficient to remove one atom Cd (or S)
form CdS crystal
To obtain what?
i need to modify/regenerate pseudo-potential file
Thank you for your quick response.
To create a dangling bond, I need to remove one atom of Cd (or S) form
periodic CdS system. Is it correct method to create a Dangling bond?
Dr. Sunil Kumar
Ph.D (Chemical Engg. IIT Delhi)
M.Tech (Chemical Engg. IIT Delhi)
B.Tech (Chemical Engg. IET-CSJMU Kanpur)
S
Thanks, Paolo. I will try whay you say. Still, a similar thing might
happen with other structures... I will try to tweak the last decimal(s),
if I see any problem.
El 12/11/2020 a las 17:50, Paolo Giannozzi escribió:
On Thu, Nov 12, 2020 at 1:34 PM José Carlos Conesa Cegarra
mailto:jccon...@ic
Thank you both!
___
Quantum ESPRESSO is supported by MaX (www.max-centre.eu)
users mailing list users@lists.quantum-espresso.org
https://lists.quantum-espresso.org/mailman/listinfo/users
Dear Kumar
There is some sort of misunderstanding here. If you remove one (S or
Cd) atom, you create a (S or Cd) vacancy, which is a point defect and
is not generally referred to as "dangling bond", even if its formation
may involve the creation of internal dangling bonds. First of all you
Hello,
I was doing an nscf calculation after getting a smooth output from scf
calculation of cubic CsPbI3 structure. But I encountered an error in the
output file of nscf calculation as below.
Error in routine c_bands (1):
too many bands are not converged
Then I tried increasing ecutwf
Hi Peshal,
You can play with the following four parameters; cut off (ecutwfc and hence
ecutrho), conv_thr, k mesh, and mixing_beta. Usually, I ignore this
warning and should not cause a problem if it is not present in the last
step of the scf calculation.
Best,
Hari Paudyal
On Thu, Nov 12, 202
Hi users,
For a given orbital, coefficients in g-space are defined up to 4*ecutwfc, a
sphere. To get to the reciprocal space FFT grid, a box, do we place zeros
everywhere else (outside the sphere but inside the FFT grid)?
If so, do you know where that is done in the code -- the closest I found is
>
> Hi users,
>
> For a given orbital, coefficients in g-space are defined up to 4*ecutwfc,
> a sphere. To get to the reciprocal space FFT grid, a box, do we place zeros
> everywhere else (outside the sphere but inside the FFT grid)?
>
Yes, see developer manual, section 6.1. Note the sphere is ins
22 matches
Mail list logo