[QE-users] The pencil decomposition option

2022-11-09 Thread Elio Physics
Dear all, I have been running some calculations on a supercomputer with some constraints on the number of processors I can run QE. I am faced with the error: %% Error in routine fft_type_set (6): there are proces

Re: [QE-users] The pencil decomposition option

2022-11-09 Thread Elio Physics
uantum ESPRESSO users Forum Subject: Re: [QE-users] The pencil decomposition option Dear Elie, You were almost there! Try adding literally what is suggested, i.e. “-pd .true.” Best, Lorenzo Bastonero Inviato da iPhone Il giorno 9 nov 2022, alle ore 15:08, Elio Physics ha scritto:  Dear all,

Re: [QE-users] The pencil decomposition option

2022-11-09 Thread Elio Physics
om: Paolo Giannozzi Sent: Wednesday, November 9, 2022 12:58 PM To: Quantum ESPRESSO users Forum ; Elio Physics Subject: Re: [QE-users] The pencil decomposition option On 11/9/22 15:07, Elio Physics wrote: >there are processes with no planes. Use pencil decomposition (-pd .true.) > >

[QE-users] Error when performing HSE calculations

2022-12-15 Thread Elio Physics
Dear all, I am trying to perform HSE calculations for a transition metal dichalcogenide system. When the first scf run finishes, the code crashes with an error: Error in routine ZPOTRF (1): Cholesky failed in invchol.

[QE-users] switched phonon mode symmetries

2023-01-21 Thread Elio Physics
Dear all, I have performed some calculations on a structure, the spacegroup (SG) of which is 62 (Pnma). This spacegroup is also found by QE (confirmed using the verbosity ='high' flag in an scf run and running a thermo_pw.x to determine the SG and the special points in the reciprocal Brillouin

[QE-users] B3u and B3g crystallographic axes in QE for the Pnma spacegroup

2023-02-07 Thread Elio Physics
Dear all, I have performed some calculations on a structure, the spacegroup (SG) of which is 62 (Pnma). This spacegroup is also found by QE (confirmed using the verbosity ='high' flag in an scf run and running a thermo_pw.x to determine the SG and the special points in the reciprocal Brilloui

[QE-users] error executing the d3_q2r.x

2023-06-08 Thread Elio Physics
Dear all, This post concerns the "d3q" and "thermal2" codes: I am trying to test the d3q code by reproducing the results for Silicon. Everything went fine except when I execute the d3_q2r.x flag which applies to the 2nd order dynamical matrices. The dynamical matrices for the 8 points in the

Re: [QE-users] [D3q-discuss] Error executing d3_q2r.x

2023-06-09 Thread Elio Physics
g d3_q2r.x Hello Elio, I copy-pasted your input and it works for me. The error must be elsewhere (are you sure you're not calli d3_r2q.x instead?) kind regards On 6/9/23 03:59, Elio Physics wrote: Dear all, I am trying to test the d3q code by reproducing the results for Silicon. Every

Re: [QE-users] [D3q-discuss] Error executing d3_q2r.x

2023-06-09 Thread Elio Physics
ne Regards ________ From: Paolo Giannozzi Sent: Friday, June 9, 2023 11:37 AM To: Elio Physics Cc: Quantum ESPRESSO users Forum Subject: Re: [QE-users] [D3q-discuss] Error executing d3_q2r.x Unrelated: you should not run so many OpenMP threads (48), it is very inefficie

Re: [QE-users] [D3q-discuss] Error executing d3_q2r.x

2023-06-14 Thread Elio Physics
_ From: Paolo Giannozzi <mailto:paolo.gianno...@uniud.it> Sent: Friday, June 9, 2023 11:37 AM To: Elio Physics <mailto:elio-phys...@live.com> Cc: Quantum ESPRESSO users Forum <mailto:users@lists.quantum-espresso.org> Subject: Re: [QE-users] [D3q-discuss] Error

[QE-users] A question on the volume_factor in the d3_tk.x code

2023-06-15 Thread Elio Physics
Dear all (and specifically Professor Paulatto), Sorry to bother you again with another question regarding the d3q code. To calculate the lattice thermal conductivity for 2D materials, we need to define a volume_factor =H/V. H is defined as the interlayer distance for the corresponding bulk mate

[QE-users] A question on the volume_factor flag in d3_tk.x

2023-06-15 Thread Elio Physics
Dear all (and specifically Professor Paulatto), Sorry to bother you again with another question regarding the d3q code. To calculate the lattice thermal conductivity for 2D materials, we need to define a volume_factor =H/V. H is defined as the interlayer distance for the corresponding bulk mate

Re: [QE-users] A question on the volume_factor flag in d3_tk.x

2023-06-15 Thread Elio Physics
be required. Cheets On June 15, 2023 8:48:16 p.m. GMT+02:00, Elio Physics wrote: Dear all (and specifically Professor Paulatto), Sorry to bother you again with another question regarding the d3q code. To calculate the lattice thermal conductivity for 2D materials, we need to define a

Re: [QE-users] A question on the volume_factor flag in d3_tk.x

2023-06-16 Thread Elio Physics
time being. Regards From: users on behalf of Lorenzo Paulatto Sent: Friday, June 16, 2023 8:06 AM To: users@lists.quantum-espresso.org Subject: Re: [QE-users] A question on the volume_factor flag in d3_tk.x On 6/15/23 21:12, Elio Physics wrote: Dear professor

[QE-users] error in davcio d3q.x

2023-06-16 Thread Elio Physics
Dear all, Once again I am writing regarding the D3Q code. When I run the d3q.x executable to compute the number of triplets on which the calculation of mat3R will be performed, I get: Looking for irreducible triplets out of 16 possibilities: 1: ( 0. 0. 0. )

[QE-users] Turbo_eels.x crashing for bulk MoS2

2023-06-30 Thread Elio Physics
Dear all, I am trying to run the turbo_eels.x executable for bulk MoS2. In the scf caluclation , I have included the van der Waals corrections as vdw_corr='DFT-D'. However the EE;LS calculation crashes with a segmentation fault error: forrtl: severe (174): SIGSEGV, segmentation fault occurred

Re: [QE-users] Turbo_eels.x crashing for bulk MoS2

2023-06-30 Thread Elio Physics
From: users on behalf of Elio Physics Sent: Friday, June 30, 2023 3:59:37 PM To: Quantum Espresso users Forum Subject: [QE-users] Turbo_eels.x crashing for bulk MoS2 Dear all, I am trying to run the turbo_eels.x executable for bulk MoS2. In the scf caluclation

Re: [QE-users] Turbo_eels.x crashing for bulk MoS2

2023-06-30 Thread Elio Physics
Thank you for your time. Please let me know if you find anything. I will try QE-7.2 as well. Regards From: Timrov Iurii Sent: Friday, June 30, 2023 2:16 PM To: Elio Physics ; Quantum Espresso users Forum Subject: Re: Turbo_eels.x crashing for bulk MoS2 Ok

[QE-users] TDDFPT imaginary and real parts of the dielectric function.

2023-10-14 Thread Elio Physics
Dear all, I have a quick question regarding the dielectric function's TDDFPT expressions of the imaginary (epsinlon_2)and real (epsilon_1) parts. Is there an explicit dependence (inversely proportional to) on volume for epsilon_2 like in the Independent particle approximation (IPA)? What is t

[QE-users] Born Huang and Huang invariance conditions

2023-10-25 Thread Elio Physics
Dear all, There have been several papers discussing the use of the so-called Born-Huang and Huang invariance conditions to soothe the possible negative frequencies that may arise in the long wavelength limit (q->0, near the G point) in the phonon dispersion of 2D and 1D material. Is there a sp

Re: [QE-users] Born Huang and Huang invariance conditions

2023-10-25 Thread Elio Physics
ntum-espresso.org/Doc/INPUT_MATDYN.html) this is the option 'all'. Not sure about q2r - should be there as well, but I do not see it - but maybe I'm missing something? nicola On 25/10/2023 16:44, Elio Physics wrote: Dear all, There have been several papers discussing the use o

[QE-users] The phonon mode eigenvector produced by matdyn.x

2024-01-25 Thread Elio Physics
Dear all, I have a naive question (only to make sure) regarding the format of the phonon eigenvector at a certain point q, produced in the .eig or (matdyn.modes) file(s). Let us take a phonon wave vector: q = (0.00041 -0.288465197 0.0 )

Re: [QE-users] The phonon mode eigenvector produced by matdyn.x

2024-01-25 Thread Elio Physics
Chiara Cignarella PhD THEOS-EPFL Switzerland On 25 Jan 2024, at 15:33, Elio Physics wrote:  Dear all, I have a naive question (only to make sure) regarding the format of the phonon eigenvector at a certain point q, produced in the .eig or (matdyn.modes) file(s). Let us take a phonon wave

[QE-users] Pseudopotential created by ld1.x error: Error in arraytorealdp Too few elements found

2021-02-03 Thread Elio Physics
Dear all, I have constructed a norm conserving pseudpotential with spin orbit coupling using the ld1.x executable of QE version 6.6. Everything went fine. However when I started an 'scf' calculation, the code stopped with the following message in the 'error file' "Error in arraytorealdp Too

[QE-users] ld1.x pseudopotential error: ""Error in arraytorealdp Too few elements found"

2021-02-05 Thread Elio Physics
Dear all, I have constructed a norm conserving pseudpotential with spin orbit coupling using the ld1.x executable of QE version 6.6. Everything went fine. However when I started an 'scf' calculation, the code stopped with the following message in the 'error file' "Error in arraytorealdp Too

[QE-users] nscf crashing

2021-03-14 Thread Elio Physics
Dear all, I am trying to perform an nscf calculation where the points in KPOINTS are produced from kmesh.pl utility. I have realized that when list of number of points exceeds a certain value (I am using 2304 points with the crystal option), the code crashes with an error: from card_

Re: [QE-users] nscf crashing

2021-03-16 Thread Elio Physics
hat your data file contains the correct syntax and the correct number of k-points. Also please try whether "pw.x -in data-file" and "pw.x < data.file" give the same problem Paolo On Sun, Mar 14, 2021 at 11:54 PM Elio Physics mailto:elio-phys...@live.com>> wrote: Dear

[QE-users] error in turbo_eels.x

2021-05-11 Thread Elio Physics
Dear all, I am trying to use the turbo_eels.x and turbo_spectrum.x to obtain the optical properties of a 2D material I am working on. I have run the 'Al' example and it went smoothly. However when applied to my system, the code crashes with the message: %%%

Re: [QE-users] error in turbo_eels.x

2021-05-12 Thread Elio Physics
May 12, 2021 2:19:15 AM To: Quantum ESPRESSO users Forum Cc: Elio Physics Subject: Re: [QE-users] error in turbo_eels.x Dear Elie Moujaes, you changed prefix, in pw calculation you used the default variable ('pwscf'), so you have to use the same in the eels input. And maybe outdir too, b

[QE-users] integrated electron phonon coupling and superconducting gap

2021-05-13 Thread Elio Physics
Dear all, I have two questions regarding the electron-phonon calculations in QE: 1- How to manually obtain the integrated electron phonon coupling lambda(w) in QE? What i tried to do is to compute 2* a2F(w)/w and summed these terms up to the value at which, lambda(w) is computed: for instance

[QE-users] specific orbital contribution to electronic bands

2021-06-27 Thread Elio Physics
Dear all, I am studying the contribution of the orbitals to the bands of a structure, in the presence of spin orbit coupling. At the beginning of the projwfc.x output file, I got: state # 1: atom 1 (S ), wfc 1 (l=0 j=0.5 m_j=-0.5) state # 2: atom 1 (S ), wfc 1 (l=0 j=0.5 m

[QE-users] How to extract the px, py, pz, dz2, ....contributions with SOC from projdos out

2021-07-03 Thread Elio Physics
Dear all, I am studying the contribution of the orbitals to the bands of a structure, in the presence of spin orbit coupling. At the beginning of the projwfc.x output file, I got: state # 1: atom 1 (S ), wfc 1 (l=0 j=0.5 m_j=-0.5) state # 2: atom 1 (S ), wfc 1 (l=0 j=0.5 m

Re: [QE-users] How to extract the px, py, pz, dz2, ....contributions with SOC from projdos out

2021-07-04 Thread Elio Physics
pt for the discussion I need. Regards From: Thomas Brumme Sent: Sunday, July 4, 2021 10:24 AM To: Quantum ESPRESSO users Forum ; Elio Physics Subject: Re: [QE-users] How to extract the px, py, pz, dz2, contributions with SOC from projdos out Dear Elie,

Re: [QE-users] How to extract the px, py, pz, dz2, ....contributions with SOC from projdos out

2021-07-05 Thread Elio Physics
wn along z). You just have to open the xml restart file ( the one inside the prefix.save directory) look for the output element and, inside it, the magnetization element, there change the element from true to false. hope this helps Pietro On 7/4/21 8:37 PM, Elio Physics wrote: Dear Thomas

Re: [QE-users] How to extract the px, py, pz, dz2, ....contributions with SOC from projdos out

2021-07-07 Thread Elio Physics
ere change the element from true to false. hope this helps Pietro On 7/4/21 8:37 PM, Elio Physics wrote: Dear Thomas, Thank you for the generous and detailed answer. Indeed, what made me confused is that some papers still use the terminology "dz2' ,for example, even in the pr

[QE-users] order of the quantum number mj in the pDOS output

2021-07-07 Thread Elio Physics
Dear all, I am trying to extract the partial density of states of a system in the presence of the spin orbit coupling (SOC). For example in the j=3/2 file, we have four columns as expected: pdos(E)_1 pdos(E)_2 pdos(E)_3 pdos(E)_4 0.000E+00 0.000E+00 0.000E+00 0.000E+00 0.

Re: [QE-users] order of the quantum number mj in the pDOS output

2021-07-08 Thread Elio Physics
users Forum ; Elio Physics Subject: Re: [QE-users] order of the quantum number mj in the pDOS output Dear Elie, looking at the beginning of one of my outputs of projwfc.x I can see that the states are always ordered ascending, i.e., beginning the lowest m_j. Thus, I guess that the order is

[QE-users] Error while performing hybrid calculations

2021-07-24 Thread Elio Physics
Dear all, I am doing some hybrid calculations to compute a precise bandgaps for some structures I have. Whilst checking the convergence of the electronic grids (I set nqx1=1,nqx2=1,nqx2=1), the code runs aroynd 12 scf steps but then exits with an error: ZPOTRF exited with INFO= 25

[QE-users] mos2.dyn2honon dispersion using the 'image' method

2021-09-01 Thread Elio Physics
Dear all I am trying to to get the phonon dispersion using the image technique. I am running: 1)the scf with 'np' processors and npools=2 2) the phonosn with 2*np processors (2=number of images), nimage=2 and npools=2 3) the last step with np processors and no images with the option recover=.t

Re: [QE-users] mos2.dyn2honon dispersion using the 'image' method

2021-09-02 Thread Elio Physics
Dear professor Paulo, Thank you for your help. The version is 6.7Max. The 'exact' error I am getting in the error file is : At line 965 of file xmltools.f90 Fortran runtime error: Sequential READ or WRITE not allowed after EOF marker, possibly use REWIND or BACKSPACE ---

[QE-users] Turbo_eels.x crashing

2021-10-02 Thread Elio Physics
Dear all, I am trying to calculate the absorption spectrum using the turbo_eels.x toolset . My system is metallic and has noncollinear spin-orbit coupling switched on, which means I cannot use neither turbo_davidson nor turbo_lanczos. For that matter , my turbo_eels input is : &lr_input prefi

Re: [QE-users] Turbo_eels.x crashing

2021-10-04 Thread Elio Physics
m Subject: Re: [QE-users] Turbo_eels.x crashing Dear Elie, Can you provide please your input file for the pw.x code? Greetings, Iurii -- Dr. Iurii TIMROV Senior Research Scientist Theory and Simulation of Materials (THEOS) Swiss Federal Institute of Technology Lausanne (EPFL) CH-1015 Lausanne,

Re: [QE-users] Turbo_eels.x crashing

2021-10-04 Thread Elio Physics
IMROV Sent: Monday, October 4, 2021 11:55 AM To: Elio Physics ; Quantum ESPRESSO users Forum Subject: Re: Turbo_eels.x crashing > ecutwfc=0 The kinetic-energy cutoff cannot be zero. Try the QE input generator and then adjust the input to your needs (add noncolin=.true., lspinorb=.true. etc.)

Re: [QE-users] Turbo_eels.x crashing

2021-10-04 Thread Elio Physics
at is going on. Any clue would be highly appreciated. Regards From: users on behalf of Elio Physics Sent: Monday, October 4, 2021 12:10 PM To: Iurii TIMROV ; Quantum ESPRESSO users Forum Subject: Re: [QE-users] Turbo_eels.x crashing The ecutwfc is not zero

Re: [QE-users] Turbo_eels.x crashing

2021-10-05 Thread Elio Physics
ds ____ From: Iurii TIMROV Sent: Tuesday, October 5, 2021 6:16 AM To: Elio Physics ; Quantum ESPRESSO users Forum Subject: Re: Turbo_eels.x crashing 1. Which version of Quantum ESPRESSO do you use? Can you try the latest version (v6.8)? 2. Which compiler

Re: [QE-users] Turbo_eels.x crashing

2021-10-06 Thread Elio Physics
From: Iurii TIMROV Sent: Wednesday, October 6, 2021 11:54 AM To: Elio Physics ; Iurii TIMROV ; Quantum ESPRESSO users Forum Subject: Re: Turbo_eels.x crashing Dear Elio, > The problem is due to the fact that you use k-points pools for the pw.x run > but you don't use k-point

Re: [QE-users] Turbo_eels.x crashing

2021-10-06 Thread Elio Physics
ROV Sent: Wednesday, October 6, 2021 11:54 AM To: Elio Physics ; Iurii TIMROV ; Quantum ESPRESSO users Forum Subject: Re: Turbo_eels.x crashing Dear Elio, > The problem is due to the fact that you use k-points pools for the pw.x run > but you don't use k-points pools for the turbo_eels

Re: [QE-users] Turbo_eels.x crashing

2021-10-07 Thread Elio Physics
Thank you for your help and patience . Will download the QE-6.8 version and perform the calculations. Regards Get Outlook for iOS<https://aka.ms/o0ukef> From: Iurii TIMROV Sent: Thursday, October 7, 2021 11:54:05 AM To: Elio Physics ; Quantum ESPRESSO

[QE-users] Error using turbo_spectrum.x

2021-10-27 Thread Elio Physics
Dear all, I am using the turbo_wwls.x and turbo_spectrum.x to obtain the absorption of a structure I have. I have successfully run the pw.x and the turbo_ells.x executables. However, when running the turbo_spectrum.x , I have obtained the following error:

Re: [QE-users] Error using turbo_spectrum.x

2021-10-27 Thread Elio Physics
ry and Simulation of Materials (THEOS) Swiss Federal Institute of Technology Lausanne (EPFL) CH-1015 Lausanne, Switzerland +41 21 69 34 881 http://people.epfl.ch/265334 ____ From: users on behalf of Elio Physics Sent: Wednesday, October 27, 2021 6:03:27 PM To: Quantum Esp

Re: [QE-users] Error using turbo_spectrum.x

2021-10-28 Thread Elio Physics
Thank you From: Iurii TIMROV Sent: Thursday, October 28, 2021 5:25 AM To: Elio Physics ; Quantum ESPRESSO users Forum Subject: Re: Error using turbo_spectrum.x Dear Elio, > One more thing: I just want to make sure that to get the absorption spect

[QE-users] Enquiry about electron-phonon calculation

2021-12-05 Thread Elio Physics
Dear all, As is well known in electron-phonon calculations, one has to do a self consistent (scf) calculation over a dense electronic grid followed by an scf calculation on a coarse grid. The electron phonon calculation is usually performed after calculation the vibrational frequencies for each

Re: [QE-users] Enquiry about electron-phonon calculation

2021-12-06 Thread Elio Physics
ource somewhere, correct? nicola > regards > > -- > Lorenzo Paulatto - Paris > On Dec 6 2021, at 3:27 am, Elio Physics wrote: > > Dear all, > > As is well known in electron-phonon calculations, one has to do a > self consistent (scf) c

[QE-users] Carbon quantm dots enquiry

2021-12-14 Thread Elio Physics
Dear all, I am working on Carbon quantum dots (CQD) systems. As is well known, these are 0D systems, that is the motion of the electrons are confined in the three directions. In my understanding, they are confined to a single point the k=0 (Gamma point). 1. How do we simulate CQD in QE?

[QE-users] Carbon quantm dots

2021-12-14 Thread Elio Physics
Dear all, I am working on Carbon quantum dots (CQD) systems. As is well known, these are 0D systems, that is the motion of the electrons are confined in the three directions. In my understanding, they are confined to a single point the k=0 (Gamma point). 1. How do we simulate CQD in QE?

[QE-users] Carbon quantum dots treatment

2021-12-21 Thread Elio Physics
Dear all, I have asked this question a week ago but did not get an answer. I am asking it again ; maybe it got missed. I am working on Carbon quantum dots (CQD) systems. As is well known, these are 0D systems, that is the motion of the electrons are confined in the three directions. In my under

[QE-users] Discrepancy in thermal electronic free energy using THERMO_PW

2022-02-28 Thread Elio Physics
Dear all, I am trying to calculate the Helmholtz free energy at different temperatures, for the system I am working on, using the THERMO_PW package; however I am getting completely different results using two different calculation schemes: 1. Using the elastic constants calculation, more s

[QE-users] Error using wannier90.x

2022-04-27 Thread Elio Physics
Dear all, I am trying to obtain the bands for bulk MoS2 using Wannier functions. I was able to: 1. obtain the nnkp file by applying wannier90.x -pp mos2 (input win file) 2. obtain the "amn" "mmn" and "eig" files by applying pw2wannier90.x However when applying wannier90.x again to get th

[QE-users] An enquiry about momentum transfer in TDDFPT

2022-05-07 Thread Elio Physics
Dear all, I have a question regarding the momentum transfer q in a TDDFPT calculation. Let us say I want to calculate how the plasmon peak frequency changes along the Gamma-K path in a hexagonal lattice. How do we set the (q1,q2,q3) variables in the turbo_eels.x input to point to that specific p

Re: [QE-users] An enquiry about momentum transfer in TDDFPT

2022-05-09 Thread Elio Physics
wiss Federal Institute of Technology Lausanne (EPFL) CH-1015 Lausanne, Switzerland +41 21 69 34 881 http://people.epfl.ch/265334 From: users on behalf of Elio Physics Sent: Sunday, May 8, 2022 12:49:39 AM To: Quantum Espresso users Forum Subject: [QE-users] An

[QE-users] molecule dismantled during 'relax'

2022-05-13 Thread Elio Physics
Dear QE users, I am relaxing a molecule in QE. I have used a vacuum distance of 13A in all directions and the flag assume_isolated='martyna-tuckerman'. I have also added the Van der Waals corrections. Other than endless fluctuations in the forces, the molecule got distorted and some atoms "fle

Re: [QE-users] R: molecule dismantled during 'relax'

2022-05-19 Thread Elio Physics
st if in the output there is any warning about the > accuracy of the forces; it may happen if the convergency threshold > is too hight. > > Pietro > > > > ________ > Da: users per conto di > Elio Physics > Inviato: venerdì 13 maggio 2022 22:

Re: [QE-users] molecule dismantled during 'relax'

2022-05-19 Thread Elio Physics
hight. Pietro Da: users per conto di Elio Physics Inviato: venerdì 13 maggio 2022 22:36 A: Quantum Espresso users Forum Oggetto: [QE-users] molecule dismantled during 'relax' Dear QE users, I am relaxing a molecule in QE. I have used a vacu

[QE-users] turbo_eels.x results

2022-05-19 Thread Elio Physics
Dear QE users, I am performing some absorption calculations using the turbo_eels.x and turbo_spectrum.x executables at q1=0.0001, q2=0.0, q3=0.0, as is advised by the developers of these toolsets. The reason I am not using the tubo_lanczos.x is because I am not using a supercell and I have inc

Re: [QE-users] turbo_eels.x results

2022-05-20 Thread Elio Physics
mented). So I would give it a try. HTH Greetings, Iurii -- Dr. Iurii TIMROV Senior Research Scientist Theory and Simulation of Materials (THEOS) Swiss Federal Institute of Technology Lausanne (EPFL) CH-1015 Lausanne, Switzerland +41 21 69 34 881 http://people.epfl.ch/265334

[QE-users] Molecular dynamics calculation crashing

2022-08-07 Thread Elio Physics
Dear QE users, I am trying to perform some molecular dynamics (MD) calculations on some 2D system I am working on. The unit cell has two atoms per unit cell. I have created a 3x3x1 supercell (18 atoms) , which will be the target of the MD job. However, whatever I do, I keep on getting the famou

Re: [QE-users] Molecular dynamics calculation crashing

2022-08-08 Thread Elio Physics
ietro Da: users per conto di Elio Physics Inviato: lunedì 8 agosto 2022 03:02 A: Quantum Espresso users Forum Oggetto: [QE-users] Molecular dynamics calculation crashing Dear QE users, I am trying to perform some molecular dynamics (MD) calculations on some 2D system I am worki

[QE-users] Weird phonon dispersion for 1D Sulfur chain

2019-07-10 Thread Elio Physics
Dear all, I am trying to check the stability of a 1D sulfur chain. However I am getting weird dispersion branches (see attached figure with 11 q-grid point). this remains even with a denser q grid. The K grid is well converged and ecutwfc was chosen to be 100Ry A.so tr2_ph is set to 10^(-20).

[Pw_forum] Error in ROUTINE BROYDEN (1)

2013-10-15 Thread Elio Physics
Dear All, I am trying to do some electron phonon/ phonon calculations using QE ; Everything works pretty well and calculations proceed for a few phonons then the code stops with the following complaint: "stopping ... %%

[Pw_forum] Error in routine Broyden

2013-10-16 Thread Elio Physics
Dear All, I am trying to do some electron phonon/ phonon calculations using QE ; Everything works pretty well and calculations proceed for a few phonons then the code stops with the following complaint: "stopping ... %%

[Pw_forum] Error in routine Broyden

2013-10-19 Thread Elio Physics
Prof. Giannozzi, Thanks for your reply. Elio > From: paolo.giannozzi at uniud.it > To: pw_forum at pwscf.org > Date: Thu, 17 Oct 2013 17:57:25 +0200 > Subject: Re: [Pw_forum] Error in routine Broyden > > On Wed, 2013-10-16 at 15:49 +0300, Elio Physics wrote: > > >

[Pw_forum] Questions on electron-phonon coefficient

2014-03-15 Thread Elio Physics
Dear all, I want to calculate the electron phonon coefficient (lambda) and the superconducting temperature Tc of my system. However I have several questions: (a) when the electron phonon coefficient is being calculated in ph.x, for every point in the phonon space, it is calculated for several val

[Pw_forum] Electron-phonon coupling

2014-03-16 Thread Elio Physics
Dear all, I want to calculate the electron phonon coefficient (lambda) and the superconducting temperature Tc of my system. However I have several questions: (a) when the electron phonon coefficient is being calculated in ph.x, for every point in the phonon space, it is calculated for several val

[Pw_forum] matdyn.x when dos=.true.

2014-03-17 Thread Elio Physics
Dear all, My goal is to calculate the electron phonon coupling (lambda) for a system. In the guide it says that using lambda.x with dos=.true. will produce phonon DOS and output the value of lambda. However when I apply matdyn.x with dos=.true. and la2F=.true.,the calculations start but then t

[Pw_forum] Matdyn.x error

2014-03-18 Thread Elio Physics
Dear all, When I apply matdyn.x with dos=.true. and la2F=.true.,the calculations start but then the code stops with the error (without outputting the value of lambda!) "Max |d(i,j)-d*(j,i)|/|d(i,j)|: % Max |d(i,j)-d*(j,i)| = 0.004615 Max |d(i,j)-d*(j,i)|/|d(i,j)|: %

[Pw_forum] errors while execution. Please help

2014-03-20 Thread Elio Physics
Hello all, (A) I have sent a few e-mails regarding some questions I have..but I got no response. Please I do not need some help in this as I tried to resolve on my own but in vain. I am trying to calculate the electron phonon coefficient lambda using matdyn.x with the option dos=.true.. I used p

[Pw_forum] q2r.x with ibravais=0

2014-03-21 Thread Elio Physics
Hello all, I have encountered an old post about q2r.x with ibravais=0 in espresso-5.0.1. I have read that q2r.x has problems reading the 'dyn' files..I am getting an error: "%% Error in routine init (1): nc alre

[Pw_forum] Vc-relax issue

2014-03-27 Thread Elio Physics
Hello all, I have done an scf calculation on a structure and obtained that the pressure is -16Kbar. I tried to relax it using 'vc-relax' requiring that the pressure be 0.0. I was able to get the new coordinates of the atoms (lattice constant did not change!) and the pressure was -0.01 KBHowe

[Pw_forum] Vc-relax issue

2014-03-28 Thread Elio Physics
Thank you Professor Paolo > From: paolo.giannozzi at uniud.it > To: pw_forum at pwscf.org > Date: Fri, 28 Mar 2014 10:29:53 +0100 > Subject: Re: [Pw_forum] Vc-relax issue > > On Thu, 2014-03-27 at 22:05 +0300, Elio Physics wrote: > > > I have done an scf calculation

[Pw_forum] Vc-relax again

2014-03-29 Thread Elio Physics
Hello all, I am still having a problem with relaxing a structure (hexagonal).. The initial pressure was calculated to be -12 kbars. I managed to reduce the pressure to 0.02 and the total force to 0.0007 using vc-relax. However when I ran a scf calculation on the relaxed structure , the pressure

[Pw_forum] How to decrease the forces on atoms for relaxation

2014-04-08 Thread Elio Physics
Hello All, I am trying to relax a system such that the force on each atom is less than 1 x10^(-4) and P=0.0. I have succeeded in reducing P to zero by playing with the lattice parameter alat; however the force on few atoms is still large (10^(-2)). I have 'vc-relaxed' the system but when I ru

[Pw_forum] Restarting of phonon calculations

2014-06-23 Thread Elio Physics
Hello all, I am doing electron phonon calculations and I would like to ask two questions: (1) I have realized that supposidely for the Gamma point, the calculations gave: lambda( 1)= 0. gamma=0.00 GHz lambda( 2)= 0. gamma= 0.00 GHz lambda( 3)= 0. gamma=0.

[Pw_forum] Restarting of phonon calculations

2014-06-23 Thread Elio Physics
Thanks Prof Paulo for your help ElioUniversidade Federal de RondoniaBrasil > From: paolo.giannozzi at uniud.it > To: pw_forum at pwscf.org > Date: Mon, 23 Jun 2014 18:21:30 +0200 > Subject: Re: [Pw_forum] Restarting of phonon calculations > > On Mon, 2014-06-23 at 18:40 +0300,

[Pw_forum] error when executing q2r.x

2014-06-23 Thread Elio Physics
Hello everyone; whenever i am trying to execute q2r.x, I get the following error when it starts reading file "elphag2ga.dyn16". q= 0. -0.19245009 0. q= -0. 0.19245009 0. reading force constants from file elphag2ga.dyn16rank 0 in job 1 caused collective a

[Pw_forum] error when executing q2r.x

2014-06-24 Thread Elio Physics
An update on the error: when I looked in the .err file, the message displayed was: forrtl: severe (59): list-directed I/O syntax error, unit 1, file /home_cluster/./elph-alphag2-PBE-NEW/elphag2ga.dyn16Image PCRoutineLineSourceq2r.x

[Pw_forum] Interpretation of the electron phonon results.

2014-10-06 Thread Elio Physics
Hello all, I have calculated the electron phonon interaction of a system I am working on and got the following results: Electron-phonon coupling constant, lambda Broadening 0.0050 lambda 0.0004 dos(Ef) 0.0038 Broadening 0.0100 lambda 0.0630 dos(Ef) 0.5291 Broadening 0.0150 l

[Pw_forum] Interpretation of electron phonon coupling

2014-11-05 Thread Elio Physics
Hello everyone. I still have some confusion regarding the convergence of the calculations of the electron phonon coupling, lambda. I have tested this for a simple system such as bilayer graphene... I have chosen a cutoff energy of 60Ry and a cutoff density ecutrho of 540 Ry ( 9 times the value

[Pw_forum] Interpretation of the electron-phonon coupling result

2014-11-05 Thread Elio Physics
Hello everyone. I still have some confusion regarding the convergence of the calculations of the electron phonon coupling, lambda.I have tested this for a simple system such as bilayer graphene... I have chosen a cutoff energy of 60Ry and a cutoff density ecutrho of 540 Ry ( 9 times the value o

[Pw_forum] problem in vc-relax/ relax

2014-11-27 Thread Elio Physics
Dear all, I am trying to optimize a structure I am working on. Firstly, I try to find what is the lattice constant that gives the minimum energy. When this value is used and an scf calculation is performed, The pressure is not exactly zero ( ~ - 2.45 Kbars) and the forces on individual atoms are

[Pw_forum] plotting a2F(w) and lambda (w)

2015-02-04 Thread Elio Physics
Dear all,I have a question about how to plot a2F(w) versus w. In fact just a confirmation: To plot w versus a2F total, does it mean i have to plot the 3rd column versus the 2nd? The columns seem intertwined together. Please can anyone clarify this. A part of one of the a2F.dos files is: # Elia

[QE-users] Kpoints.x for lambda.x use

2018-05-22 Thread Elio Physics
Dear all, I want to use lambda.x to calculate the electron phonon coupling and Tc. Some of my phonon grids defined by (nq1, nq2, nq3) have odd number of points such as 3, 7, 13, 21 . My question is how can I define the grid in kpoints.x to produce 3, 7, 13 or 21 points? If it is not possibl

[QE-users] Kpoints.x used for lambda.x

2018-05-24 Thread Elio Physics
Dear all, I want to use lambda.x to calculate the electron phonon coupling and Tc. Some of my phonon grids defined by (nq1, nq2, nq3) have odd number of points such as 3, 7, 13, 21 . My question is how can I define the grid in kpoints.x to produce 3, 7, 13 or 21 points? If it is not possibl

[QE-users] alpha^2F (w) and lambda (w)

2018-05-27 Thread Elio Physics
Dear all, I am trying to plot The Eliashberg function and the electron phonon parameter in terms of the frequencies. I know that matdyn.x produces these two files and that alpha^2F data is found in a2FDos.X files . 1- Where can I find the lambda (w) information? 2- How can I plot these graphs

Re: [QE-users] alpha^2F (w) and lambda (w)

2018-05-29 Thread Elio Physics
okyo.ac.jp -- From: users On Behalf Of Elio Physics Sent: Monday, May 28, 2018 9:19 AM To: Quantum Espresso users Forum Subject: [QE-users] alpha^2F (w) and lambda (w) Dear all, I am trying to plot The Eliashberg function and the elect

Re: [QE-users] alpha^2F (w) and lambda (w)

2018-05-31 Thread Elio Physics
ot be used. Best regards, Mitsuaki Kawamura From: users On Behalf Of Elio Physics Sent: Tuesday, May 29, 2018 10:02 PM To: Quantum Espresso users Forum Subject: Re: [QE-users] alpha^2F (w) and lambda (w) Dear Mitsuaki, Thanks for your reply. I just want to add more question regards the points p

[QE-users] Wannier orthogonalization failed on k-point....

2018-11-11 Thread Elio Physics
Dear all, I am trying to produce the Hamiltonian of bcc Fe using wannier_ham.x executable. However I am facing an error: "Wannier orthogonalization failed on k-point..." I know that this error is due to not having enough bands for all kpoints. However I find it difficult to get this informatio

[QE-users] Wannier Orthogonalization fails on k-point...

2018-11-14 Thread Elio Physics
Dear all, I am trying to produce the Hamiltonian of bcc Fe using wannier_ham.x executable. However I am facing an error: "Wannier orthogonalization failed on k-point..." I know that this error is due to not having enough bands for all kpoints. However I find it difficult to get this informatio

[Pw_forum] Atomic positions for Black Phosphorus calculations

2016-01-11 Thread Elio Physics
Dear all, I am trying to perform some calculations on Black Phosphorus (BP). To get the atomic positions I used the Crystal Builder, where I have chosen the lattice type to be base centered orthorhombic. The "builder" produced a set of cartesian and fractional (in terms of the primitive cel

Re: [Pw_forum] Atomic positions for Black Phosphorus calculations

2016-01-11 Thread Elio Physics
-0.10168 1.10168 0.08056 P -0.60168 0.60168 0.41944 P -0.39832 1.39832 0.58056 P 0.39832 0.60168 0.41944 These two atom positions have the same coordinate. This could be the problem. Duc-Long On 1/12/2016 6:44 AM, Elio Physics wrote: Dear all, I am trying to perform some calculations on Black

Re: [Pw_forum] Atomic positions for Black Phosphorus calculations

2016-01-11 Thread Elio Physics
!!! That was also why pwscf showed that error. Duc-Long On 1/12/2016 7:46 AM, Elio Physics wrote: Dear Duc-Long, thanks for your response. I do not think they have the same coordinate. The "y" coordinate of one is 0.10168 while that of the 2nd is 1.10168, that is a difference of 1 a

  1   2   >