[QE-users] Errors of phonon calcualtions with Grimme's DFT-D3

2023-08-05 Thread Jibiao Li via users
APPLICATION PROCESSES = RANK 1 PID 145409 RUNNING AT ubuntue = KILLED BY SIGNAL: 9 (Killed) Any suggestion to resolve this problem? I look forward to receiving your reply. Sincerely Jibiao Li phonons at Gamma inputph tr2_ph=1.0d-14, prefix='atop', alpha_mix=0.15, fildyn='phG.dyn

[QE-users] Error of phonon calcualtions with Grimme's DFT-D3

2023-07-31 Thread Jibiao Li via users
APPLICATION PROCESSES = RANK 1 PID 145409 RUNNING AT ubuntue = KILLED BY SIGNAL: 9 (Killed) Any suggestion to resolve this problem? I look forward to receiving your reply. Sincerely Jibiao Li phonons at Gamma inputph tr2_ph=1.0d-14, prefix='atop', alpha_mix=0.15, fildyn='phG.dyn

[QE-users] Problem of Phonon calculations with Grimme's DFT-D3

2023-07-30 Thread Jibiao Li via users
the method been implemented in the code later than 6.8? If not, do you have a plan to include this method in the coming QE? I look forward to receiving your reply. Sincerely Jibiao Li phonons at Gamma inputph tr2_ph=1.0d-14, prefix='atop', alpha_mix=0.15, fildyn='phG.dyn', amass(1)=15.99

Re: [QE-users] r2SCAN

2023-06-01 Thread Jibiao Li via users
Hi, Dr. BOUAFIA You need to use libxc by specifying input_dft in your input file. Regards Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus Research ID: 54944118000 Web of Science Research ID:http

[QE-users] TPSS pseudo files for metals are highly required

2023-05-12 Thread Jibiao Li via users
...@qq.com Thank you very much! Best Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus Research ID: 54944118000 Web of Science Research ID:http://www.webofscience.com/wos/author/record/GLS-7259-2022

[QE-users] SCAN pseudopotential files are highly required

2023-05-10 Thread Jibiao Li via users
such as Pt? Thank you very much! Regards Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus Research ID: 54944118000 Web of Science Research ID:http://www.webofscience.com/wos/author/record/GLS

Re: [QE-users] Error in routine read_pp_semilocal with FHI converted UPF

2023-05-10 Thread Jibiao Li via users
Hi,Paolo Thank you so much for your kind link. I have been searching for that in the whole world, but nothing found. Why the link is absent in the official QE site? Thanks so very much! Best Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian

[QE-users] Error in routine read_pp_semilocal with FHI converted UPF

2023-05-10 Thread Jibiao Li via users
f k-points (npk) = 4 Max angular momentum in pseudopotentials (lmaxx) = 4 % Error in routine read_pp_semilocal (1): error reading SL PPs % stopping ...

[QE-users] Convert pseudo from fhi to upf format

2023-05-09 Thread Jibiao Li via users
to upf format?Can anyone show me the answer? Thank you very much! Regards Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus Research ID: 54944118000 Web of Science Research ID:http

[QE-users] V_H potential in pp.x

2023-02-22 Thread Jibiao Li via users
Dear All, From the input description file, I learned that total potential= V_bare + V_H + V_xc. I assume that V_H is the Hatree potential. Am I right? Does it have a different definition? Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16

Re: [QE-users] Run error of using M06 functional with libxc 6.0.0

2022-12-22 Thread Jibiao Li
0 0 0 Au 2.9132799400 0.00 -0.30 0 0 0 Au 0.00 5.04594887000.00 0 0 0 END_POSITIONS K_POINTS automatic 4 4 1 0 0 0 END_ENGINE_INPUT END Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue

[QE-users] Run error of using M06 functional with libxc 6.0.0

2022-12-20 Thread Jibiao Li
3500.00 0 0 0 Au 1.4566399690 2.52297443500.00 0 0 0 Au 2.9132799400 0.00 -0.30 0 0 0 Au 0.00 5.04594887000.00 0 0 0 END_POSITIONS K_POINTS automatic 4 4 1 0 0 0 END_ENGINE_INPUT END Jibiao Li D

[QE-users] Run error of using PBE+D3/M06 functional with libxc 6.0.0

2022-12-20 Thread Jibiao Li
0.00 0 0 0 Au 1.4566399690 2.52297443500.00 0 0 0 Au 2.9132799400 0.00 -0.30 0 0 0 Au 0.00 5.04594887000.00 0 0 0 END_POSITIONS K_POINTS automatic 4 4 1 0 0 0 END_ENGINE_INPUT END Jibiao

Re: [QE-users] Run error of M06 exchange with libxc 4.3.4

2022-12-12 Thread Jibiao Li
Hi,Fabrizio Thank you for your kind clear answer. It really helps. Best Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus Research ID: 54944118000 Web of Science Research ID: F-1905-2016

Re: [QE-users] Run error of M06 exchange with libxc 4.3.4

2022-12-12 Thread Jibiao Li
the old full-name notation: Best Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus Research ID: 54944118000 Web of Science Research ID: F-1905-2016

[QE-users] Run error of input_dft with libxc 4.3.4

2022-12-09 Thread Jibiao Li
0.00 0 0 0 Pd 0.00 4.86664622100.00 0 0 0 END_POSITIONS K_POINTS automatic 4 4 1 0 0 0 END_ENGINE_INPUT END Regards Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408

Re: [QE-users] Run error of M06 exchange with libxc 4.3.4

2022-12-08 Thread Jibiao Li
tions are allowed when zero tails are present. The above example is still valid by putting:input_dft = `XC-001I-000I-003L-130L' since no MGGA terms are present. Non-local terms can be included by just adding their name after the index notation, for example:input_dft=`XC-001i-004i-013i-vdw2'" Best

[QE-users] Run error of M06 exchange with libxc 4.3.4

2022-12-08 Thread Jibiao Li
0 0 0 0 Pd 0.00 4.86664622100.00 0 0 0 END_POSITIONS K_POINTS automatic 4 4 1 0 0 0 END_ENGINE_INPUT END Regards Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus

[QE-users] Installation error of QE 7.1 with oneAPI

2022-12-08 Thread Jibiao Li
) make[1]: *** [../make.inc:16: gen_us_dj_gpu.o] Error 1 make[1]: Leaving directory '/home/jibiaoli/codes/espresso-7.1/upflib' make: *** [Makefile:212: libupf] Error 1 Any idea to resolve this error? Thank you very much Regards Jibiao Li Department of Materials Science and Engineering Yangtze

Re: [QE-users] ERROR: Compiling under Intel oneAPI

2022-11-20 Thread Jibiao Li
Hi??Chamara Please make sure that the fox folder is there. I got the same error if the fox folder is missing . Best Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus Research ID: 54944118000

[QE-users] Is it possible to use different input_dft for different types of atoms

2022-11-17 Thread Jibiao Li
Dear all, I have a simple question about using "input_dft". Is it possible to use different input_dft for different types of atoms in a system? In this way, the system can be accurately described for some reasons. Regards Jibiao Li Department of Materials Science and Engineerin

[QE-users] Why I can not reproduce ferromagnetic fcc Ni in QE 7.1

2022-11-16 Thread Jibiao Li
Ni in QE 7.1? Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus Research ID:54944118000 Web of Science Research ID:F-1905-2016 CONTROL calculation = 'vc-relax' , restart_mode

[QE-users] QE 7.1 compilation error

2022-11-16 Thread Jibiao Li
to remove this error? Regards Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus Research ID: 54944118000 Web of Science Research ID: F-1905-2016

[QE-users] QE installation error in version 7.1

2022-11-15 Thread Jibiao Li
containing pdgemr2d... no checking ELPA... checking for Environ... not used checking for ranlib... ranlib checking for wget... wget -O setting WGET... wget -O checking for git... no configure: error: git needed Any idea to resolve this error? Best Jibiao Li Department of Materials Science

Re: [QE-users] Error about incorrect atomic position for ESM

2022-09-19 Thread Jibiao Li
Dear Giuseppe, Thank you for your detailed answer which would be definitely helpful. Jibiao Li --Original-- From: "Quantum ESPRESSO

[QE-users] Error about incorrect atomic position for ESM

2022-09-19 Thread Jibiao Li
0.1720290525 C 3.7096081115 10.70804183350.1894854994 C 4.9453339628 11.42069563730.2114298160 C 6.1802465576 10.70595325100.2075739383 C 7.4159381224 11.41896234640.2098980144 K_POINTS automatic 2 2 4 0 0 0 Jibiao Li Department of Materials

Re: [QE-users] error of band-structure calculations with tpiba_c

2022-09-12 Thread Jibiao Li
eigenvalues not converged %% Error in routine cdiaghg (793): S matrix not positive definite %% stopping ... Jibiao Li It looks like

Re: [QE-users] error of band-structure calculations with tpiba_c

2022-09-08 Thread Jibiao Li
: a serial algorithm will be used (nothing else) Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 --Original-- From

Re: [QE-users] error of band-structure calculations with tpiba_c

2022-09-08 Thread Jibiao Li
: "Quantum ESPRESSO users Forum" http://www.researcherid.com/rid/A-1951-2009 Web page: https://sites.google.com/view/giovanni-cantele/home Il giorno gio 8 set 2022 alle ore 10:21 Jibiao Li http://www.resear

Re: [QE-users] error of band-structure calculations with tpiba_c

2022-09-08 Thread Jibiao Li
Hi, Giovanni I used command: mpirun -np 2 pw.x http://www.researcherid.com/rid/A-1951-2009 Web page:https://sites.google.com/view/giovanni-cantele/home Il giorno gio 8 set 2022 alle ore 10:21 Jibiao Li http://www.researcherid.com/rid/A-1951-2009 Web page: https://sites.google.com/view

Re: [QE-users] error of band-structure calculations with tpiba_c

2022-09-08 Thread Jibiao Li
? %% Error in routine fft_type_set (6): there are processes with no planes. Use pencil decomposition (-pd .true.) %% Jibiao Li Department of Materials Science and Engineering Yangtze Normal

Re: [QE-users] error of band-structure calculations with tpiba_c

2022-09-07 Thread Jibiao Li
with no planes. Use pencil decomposition (-pd .true.) %% Any idea to remove this error? Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China

[QE-users] error of band-structure calculations with tpiba_c

2022-09-07 Thread Jibiao Li
reading tpiba k points %% Something wrong with my input format below? K_POINTS tpiba_c 3 0.0 0.0 0.0 0.5 0.0 0.0 0.0 0.5 0.0 I look forward to receiving your solution. Jibiao Li Department of Materials Science

Re: [QE-users] Can QE project selected electronic states of selected atoms into the k-space?

2022-09-01 Thread Jibiao Li
? The latter question is more relevant to my concern. I look forward to receiving your reply. Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus Research ID: 54944118000 Web of Science Research ID: F

Re: [QE-users] Can QE project selected electronic states of selected atoms into the k-space?

2022-08-28 Thread Jibiao Li
DearLorenzo Let me be clear. My question actually is "Can QE projectselected electronic states of selected atoms into the first BrillouinZone?" Best Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, Ch

Re: [QE-users] Can QE project selected electronic states of selected atoms into the k-space?

2022-08-28 Thread Jibiao Li
Dear Lorenzo, Thank you for your reply, but my question is "Can QE projectselected electronic states of selected atoms into the momentum space?" Clearly wave-functionsare things in the real space not the momentum space. Regards Jibiao Li Department of Materials Science and E

[QE-users] Can QE project selected electronic states of selected atoms into the k-space?

2022-08-28 Thread Jibiao Li
projecteither all or selected electronic states of selected atoms into the k-space in QE? Regards Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Jibiao Li Department of Materials Science and Engineering

[QE-users] Projecting electronic states in the momentum space

2022-08-25 Thread Jibiao Li
projecteither all or selected electronic states of selected atoms into the k-space in QE? Regards Jibiao Li Department of Materials Science and Engineering Yangtze Normal University Juxian Avenue 16, Fuling, Chongqing, China 408100 Scopus Research ID: 54944118000 Web of Science Research

[QE-users] How should I visualize outcomes of cp molecular dynamics

2021-12-07 Thread Jibiao Li
to visualize it? Regards Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Publons: https://publons.com/researcher/2283103/jibiao-li/ Email: jibia...@yznu.edu.cn, jibia...@foxmail.com, jibiao

[QE-users] PP calculations do not produce 3D xsf format

2021-11-24 Thread Jibiao Li
file *.xsf" but never finish Calling punch_plot, plot_num = 0 Writing data to file mol_den Reading data from file mol_den Writing data to be plotted to file mol_den.xsf Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling,

[QE-users] Projwfc | Cannot project on zero atomic wavefunctions

2021-11-13 Thread Jibiao Li
2.0244612923 1.2352374339 1.8175539219 Se -0.0024465720 4.6710668096 1.7993247490 Se 4.0819751445 4.6894743314 1.8087753819 Se 6.1346094708 1.2375994064 1.8159705186 K_POINTS automatic 4 4 1 0 0 0 Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian

Re: [QE-users] Catastrophic compilation errors of QE 6.8

2021-10-28 Thread Jibiao Li
Yes, the released 6.8 version. --Original-- From: "Quantum ESPRESSO users Forum"

[QE-users] Catastrophic compilation errors of QE 6.8

2021-10-27 Thread Jibiao Li
make[1]: Leaving directory '/home/jibiaoli/codes/espresso-6.8/install' make: *** [Makefile:230: libcuda] Error 2 Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.com

[QE-users] ?????? bugs in running NEB in QE 6.8

2021-08-29 Thread Jibiao Li
Sorry, Paolo, I just found its a problem of job submitting format. When I added 211 to the end of the command: mpirun -np 50 neb.x -inp ufu.neb.inp ufu.neb.out, everything goes smoothly. Thank you for your time. Jibiao Li

[QE-users] bugs in running NEB in QE 6.8

2021-08-28 Thread Jibiao Li
000 0 0 0 Li 6.813000 0.00 0.00 0 0 0 Li 6.813000 3.406500 0.00 0 0 0 Li 6.813000 6.813000 0.00 0 0 0 END_POSITIONS K_POINTS automatic 4 4 1 0 0 0 END_ENGINE_INPUT END Dr. Jibiao Li, Department o

[QE-users] [SPAM] bug in running neb in QE6.8

2021-08-27 Thread Jibiao Li
0 0 0 Li 6.813000 6.813000 0.00 0 0 0 END_POSITIONS K_POINTS automatic 4 4 1 0 0 0 END_ENGINE_INPUT END Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu

[QE-users] incompatible nr1x or nr2x error of charge density differences calculations

2021-07-29 Thread Jibiao Li
, weight(3) = -1.0, fileout = 'dif_den_2d.xsf' , iflag = 2 , output_format = 3 , e1(1) = 0, e1(2) = 1.379804477, e1(3) = 0, e2(1) = 0, e2(2) = 0, e2(3) = 3.390902419, x0(1) = 0.5, x0(2) = 0, x0(3) = 0, nx = 56 , ny = 138 , / Dr. Jibiao Li, Department of Material

[QE-users] Errors in opening Na and K tags in PSlibrary

2021-07-29 Thread Jibiao Li
with errno=28 No space left on device Can anyone fix it as soon as possible Sincerely Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.com, jibiao

[QE-users] Errors in opening Na and K tags in PSlibrary

2021-07-28 Thread Jibiao Li
Dear All, Here I am reporting a small error in opening Na and K tags in PSlibrary online file_put_contents(): write of 684 bytes failed with errno=28 No space left on device Can anyone fix it as soon as possible Sincerely Dr. Jibiao Li, Department of Material Science and Engineering

[QE-users] Polarizability Calculations of water adsorbed on a metal surface

2021-07-17 Thread Jibiao Li
0.0 0.0 FREQUENCIES 2 0.0d0 1.5d0 I am eager to know whether I can use the similar approach to calculate Polarizability of a water molecule adsorbed on a metal surface. In this curcirmstance, is my choice of adding "nat_todo" in the input file working ? Sincerely Dr. Jibiao Li,

Re: [QE-users] unrecognized dft in phonon calculations

2021-07-13 Thread Jibiao Li
(1,4,13,0,1,0,0) -^ dft_mod.f90(189): error #6784: The number of actual arguments cannot be greater than the number of dummy arguments. [XCLIB_SET_DFT_IDS] dft_defined = xclib_set_dft_IDs(1,4,28,0,1,0,0) What should I do to solve this problem? Best Jibiao Li

[QE-users] Doubts on phonon calculations under pressures

2021-07-03 Thread Jibiao Li
phonon calculations? These questions puzzled me for a long time. Could any body help me? Best Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.com, jibiao

[QE-users] Doubts on phonon calculations under pressures

2021-07-03 Thread Jibiao Li
phonon calculations? These questions puzzled me for a long time. Could any body help me? Best Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.com, jibiao

Re: [QE-users] unrecognized dft in phonon calculations

2021-06-30 Thread Jibiao Li
Thank you so much for your kind reply. Many thanks --Original-- From: "Quantum ESPRESSO users Forum"

Re: [QE-users] unrecognized dft in phonon calculations

2021-06-30 Thread Jibiao Li
Dear Fabrizio, During my calculations, I found that only this combination gives acceptable description about the system. This means this conbination must be used if we expect useful outcomes. Please tell me is there any other way to continue my calculations? Best Jibiao Li

[QE-users] unrecognized dft in phonon calculations

2021-06-29 Thread Jibiao Li
0.00 0 0 0 Pd 2.8130829080 0.00 0.00 0 0 0 Pd 0.00 4.8724025220 0.00 0 0 0 K_POINTS automatic 4 4 1 0 0 0 Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia

[QE-users] Error in routine local_dos from pp calculations

2021-06-12 Thread Jibiao Li
K_POINTS automatic 2 1 1 0 0 0 Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.com, jibiao...@hotmail.com___ Quantum

Re: [QE-users] Inconsistency | It seems that omega_ln is in the unit of meV rather than K

2021-05-04 Thread Jibiao Li
Dear Mitsuaki, Thank you very much for pointing out the crux. I just realize that the structure is not stable under high pressure. Things are different from the cubic H3S structure without the carbon replacement. Sincerely Dr. Jibiao Li, Department of Material Science and Engineering Yangtze

Re: [QE-users] Inconsistency | It seems that omega_ln is in the unit of meV rather than K

2021-05-04 Thread Jibiao Li
Dear Mitsuaki, I got the same outcome. Actually the structure is relaxed under a high pressure (see the input below) before the scf calculation. In the scf calculation, there is no option to specify the applied pressure. Is this the right way to do Tc calculations for materials under high

[QE-users] Inconsistency | It seems that omega_ln is in the unit of meV rather than K

2021-05-04 Thread Jibiao Li
Dear All, I am trying to calculate Tc of the C-S-H system by simply replacing one S atom by one C atom in the cubic cell. Followed by the instruction by Dr. Mitsuaki Kawamura, I computedlambda and omega_ln with matdyn.x by using the tetrahedron method (see the inputs). However, I found the

[QE-users] Inconsistency | Is omega_ln truly in Kelvin

2021-04-26 Thread Jibiao Li
Dear All, I am trying to calculate Tc of the C-S-H system by simply replacing one S atom by one C atom in the cubic cell. Followed by the instruction by Dr.Mitsuaki Kawamura, I computedlambda and omega_ln with matdyn.x by using the tetrahedron method (see the inputs). However, I found the

[QE-users] Why the choice of different spin orientations leads to completely the same total energy

2021-04-26 Thread Jibiao Li
7849236132 1.2436057457 0.8730599352 C 11.7383344691 3.6989245238 0.8730590021 C 11.7849236132 6.1542433010 0.8730599352 K_POINTS automatic 1 2 1 0 0 0 Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Em

[QE-users] Why magnetic system give zero magnetic moment for all atoms

2021-04-18 Thread Jibiao Li
2.4525476568 0.8730541166 C 9.6256116280 4.9453013898 0.8730541166 C 11.7849236132 1.2436057457 0.8730599352 C 11.7383344691 3.6989245238 0.8730590021 C 11.7849236132 6.1542433010 0.8730599352 K_POINTS automatic 1 2 1 0 0 0 Dr. Jibiao Li, Department of Material Science

[QE-users] Calculations with van der Waals correction stopped with an error

2021-04-08 Thread Jibiao Li
Hi, All My NEB calculations with the the parameters below go smoothly vdw_corr = 'grimme-d2' , but when I tried to perform NEB calculations with the following parameters vdw_corr = 'grimme-d3' , but the program stopped and gave the error below. The input file is listed.

Re: [QE-users] problems computing cholesky

2021-04-05 Thread Jibiao Li
please lower the values of the number of cpu and ecut ---Original--- From: "Riemann Derakhshan"___ Quantum ESPRESSO is supported by MaX (www.max-centre.eu) users mailing list users@lists.quantum-espresso.org

Re: [QE-users] Convergence issue

2021-03-30 Thread Jibiao Li
Hi Mayuri, Please try to more extra bands by using nbnd, it usually helps convergence. Jibiao Li --Original-- From: "Quantum ESPRESSO

[QE-users] Report on a Bug in plotband.x

2020-12-23 Thread Jibiao Li
r in 6.4.1 Hope you can fix it in the coming release. Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.com, jibiao...@hotmail.com Homepage: https://www.researchgate.n

Re: [QE-users] phonon calculations and el-ph couplings

2020-12-10 Thread Jibiao Li
-centre.eu) users mailing list users@lists.quantum-espresso.org https://lists.quantum-espresso.org/mailman/listinfo/users Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.c

[QE-users] phonon calculations and el-ph couplings

2020-12-05 Thread Jibiao Li
h_dir/elph.inp_gamma.74 elph_dir/elph.inp_gamma.75 elph_dir/elph.inp_gamma.76 elph_dir/elph.inp_gamma.77 elph_dir/elph.inp_gamma.78 elph_dir/elph.inp_gamma.79 elph_dir/elph.inp_gamma.80 elph_dir/elph.inp_gamma.81 elph_dir/elph.inp_gamma.82 elph_dir/elph.inp_gamma.83 elph_dir/elph.inp_gamma.84 0.10

[QE-users] Phonon disperison calculations with nat_todo

2020-11-19 Thread Jibiao Li
Dear All, Is it possible to do phonon dispersion calculations with nat_todo option? I am only interested in adlayers adsorbed on a metal surface. May I do this with QE? Sinerely Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16

[QE-users] Electron-phonon calculations stopped and exited

2020-10-22 Thread Jibiao Li
. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.com, jibiao...@hotmail.com Homepage: https://www.researchgate.net/profile

[QE-users] Electron-phonon calculation exited during running

2020-10-21 Thread Jibiao Li
='bulk.dyn', electron_phonon='interpolated', el_ph_sigma=0.005, el_ph_nsigma=10, trans=.true., ldisp=.true., nq1=8, nq2=8, nq3=8, search_sym=.false., / Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email

[QE-users] Geometry optimization using lfcpopt exited without any error message

2020-07-10 Thread Jibiao Li
: Writing output data file ./atop.save/ (exited without any error message) What's wrong with my calculations? Is it a bug of the code? The input file is attatched for further examination. Please help me resolve this unexpected error Dr. Jibiao Li, Department of Material Science

Re: [QE-users] Geometry optimization using lfcpopt exited without any error message

2020-07-09 Thread Jibiao Li
Hi, Minoru What I saw in your email is the garbled codes. Could you please reply again to my email box: jibia...@foxmail.com Let me repeat the previous email I am performing calculations of geometry optimization using lfcpopt (QE develop version), but the calculation always exited after

[QE-users] Geometry optimization using lfcpopt exited without any error message

2020-07-09 Thread Jibiao Li
0 0 0 Pd 4.126710530 2.382557436 0.0 0 0 0 Pd 6.877850884 7.147672307 0.0 0 0 0 K_POINTS automatic 4 4 1 0 0 0 Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia

[QE-users] Geometry optimization using lfcpopt exited without any error message

2020-07-09 Thread Jibiao Li
Dear QE users and developers, I am performing calculations of geometry optimization using lfcpopt (QE develop version), but the calculation always exited after the first step of the optimization. Prior to the second optimization step, It simply stopped after the following message: Writing

Re: [QE-users] configure error: Could not find required libxc library.

2020-07-03 Thread Jibiao Li
Hi, Fabrizio Thank you so much. It works! Jibiao Li --Original-- From:"Fabrizio Ferrari"https://www.researchgate.net/profile/Jibiao_Li ___ Quantum ESPRESSO is supported by MaX (www.max-centre.eu/quantu

[QE-users] configure error: Could not find required libxc library.

2020-07-02 Thread Jibiao Li
: Could not find required libxc library. Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.com, jibiao...@hotmail.com Homepage: https://www.researchgate.net/profile

[QE-users] Compilation error of QE develop version

2020-07-02 Thread Jibiao Li
?? Makefile:193: recipe for target 'mods' failed make: *** [mods] Error 1 Any idea to resolve this problem? Need your help Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia

Re: [QE-users] Unrecognized dft when specifying BEEF-vdW functional

2020-06-29 Thread Jibiao Li
n 29, 2020 at 11:48 AM Jibiao Li https://www.researchgate.net/profile/Jibiao_Li ___ Quantum ESPRESSO is supported by MaX (www.max-centre.eu/quantum-espresso) users mailing list users@lists.quantum-espresso.org https://lists.quantum-espresso.org/mailma

Re: [QE-users] Unrecognized dft when specifying BEEF-vdW functional

2020-06-29 Thread Jibiao Li
Hi, Fabrizio, Thank you for the kind reply. I specified input_dft ='GGA_XC_BEEFVDW', but the error remains: unrecognized dft Did I do something wrong with the input ? Regards Jibiao Li --Original-- From:"Fabrizio Ferrari"https://www.tddft.or

Re: [QE-users] Unrecognized dft when specifying BEEF-vdW functional

2020-06-29 Thread Jibiao Li
un 29, 2020 at 11:48 AM Jibiao Li https://www.researchgate.net/profile/Jibiao_Li ___ Quantum ESPRESSO is supported by MaX (www.max-centre.eu/quantum-espresso) users mailing list users@lists.quantum-espresso.org https://lists.quantum-espresso.org/ma

Re: [QE-users] Unrecognized dft when specifying BEEF-vdW functional

2020-06-29 Thread Jibiao Li
Hi, All Isn't the BEEF functional included in LIBXC 4.3.4? Does the errors suggest that it may not be included in LIBXC 4.3.4? Best Jibiao Li --Original-- From:"Fabrizio Ferrari"https://www.researchgate.net/profile

[QE-users] Unrecognized dft when specifying BEEF-vdW functional

2020-06-29 Thread Jibiao Li
... END_POSITIONS K_POINTS automatic 2 2 1 0 0 0 END_ENGINE_INPUT END Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.com, jibiao...@hotmail.com Homepage: https

Re: [QE-users] Error from calculations with NCPP+SCAN

2020-06-22 Thread Jibiao Li
Hi, Fabrizio I have successfully compiled libxc v4.3.4 with QE 6.4.1 by specifying the flags in DFLAGS DFLAGS = -D__LIBXC -D__INTEL -D__FFTW3 -D__MPI -D__PARA LD_LIBS = -L/home/yons/codes/libxc-5.0.0/lib -lxcf90 -lxc It seems that libxc v5.0.0 does not work with QE 6.5 Thanks

Re: [QE-users] ONCV pseudopotential files are "not readable"

2020-06-20 Thread Jibiao Li
Hi, Paolo I downloaded those pp files from the offical website of QE. I am using QE 6.4.1. What's wrong with the PP files? Jibiao Li --Original-- From:"p.giannozzi"https://www.researchgate.net/profile

[QE-users] Error from calculations with NCPP+SCAN

2020-06-20 Thread Jibiao Li
. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.com, jibiao...@hotmail.com Homepage: https://www.researchgate.net/profile

[QE-users] ONCV pseudopotential files are "not readable"

2020-06-19 Thread Jibiao Li
readable %% % f le /home/yons/pseudo/ONCV/H_ONCV_PBE_sr.UPF not readable %% %%%% Dr. Jibiao Li, Department of Material Science and Engineering Yang

Re: [QE-users] NEB.x: large error in first image, applying Electric field

2020-05-13 Thread Jibiao Li
Hi, Masumeh I guess atomic positions of frozen atoms are not the same. Please carefully check the atomic positions. Best Jibiao Li --Original-- From:"Masum Alihosseini"___ Quantum ESPRESSO is suppor

Re: [QE-users] Is this a bug in vc-relax of QE-6.4.1

2019-12-24 Thread Jibiao Li
Hi, Lorenzo It complaint in the output "noncollinear stress +GGA in not implemented". What should I do next if I insist on using spin orbital coupling ? Regards Jibiao Li --Original-- From:"Lorenzo Paulatto"https://www.researchgate.n

[QE-users] Is this a bug in vc-relax of QE-6.4.1

2019-12-23 Thread Jibiao Li
6.106237815 0.0 Te 4.230525655 2.442495126 0.0 Te 2.115262828 6.106237815 0.0 K_POINTS automatic 4 4 1 0 0 0 Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia

[QE-users] How to perform K-edge X-ray absorption calculations

2019-12-10 Thread Jibiao Li
with a core-hole for the K-edge spectra? I am very pleased to receive your pseudopotential file if you have a copy on your computer. Can anyone help me ? Sincerely Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China

[QE-users] Error in routine cdiaghg (1590): S matrix not positive definite

2019-11-08 Thread Jibiao Li
. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@yznu.edu.cn, jibia...@foxmail.com, jibiao...@hotmail.com Homepage: https://www.researchgate.net/profile

Re: [QE-users] zero-point energy (ZPE) correction

2019-10-20 Thread Jibiao Li
Hi, Tom Here is an example for phonons at Gamma phonons at Gamma tr2_ph=1.0d-14, prefix='sym', alpha_mix=0.1, fildyn='phG.dyn', amass(3)=107.8682, amass(1)=15.999, amass(2)=1.0079, outdir='./' nat_todo=5, / 0.0 0.0 0.0 1 2 3 4 5 Dr. Jibiao Li, Department of Material

Re: [QE-users] Computer dependent phonon frequencies

2019-10-09 Thread Jibiao Li
Dear Prof. Paolo Giannozzi, The two computers have the exact same OS (ubuntu), compilers (ifort), libraries, and parallel environments installed. It really strange why different results produced by the same inputs. Can anyone help me? Best -- Dr. Jibiao Li, Department

[QE-users] Computer dependent phonon frequencies

2019-10-09 Thread Jibiao Li
0 0 0 phonons at Gamma tr2_ph=1.0d-14, prefix='sym', alpha_mix=0.1, fildyn='phG.dyn', amass(1)=107.8682, amass(2)=15.999, amass(3)=1.0079, outdir='./' nat_todo=5, / 0.0 0.0 0.0 1 2 3 4 5 -- Dr. Jibiao Li, Department of Material Science and Engineering Yangtz

[QE-users] Strange frequencies hard to interpret

2019-10-06 Thread Jibiao Li
4.325691773 -0.832472253 0.00 0 0 K_POINTS automatic 4 4 1 0 0 0 phonons at Gamma tr2_ph=1.0d-14, prefix='sym', alpha_mix=0.1, fildyn='phG.dyn', amass(1)=196.966, amass(2)=15.999, amass(3)=1.0079, outdir='./' nat_todo=5, / 0.0 0.0 0.0 1 2 3 4 5

[QE-users] Which pseudopotentials are supported by Car-Parrinello Molecular Dynamics in QE

2019-08-29 Thread Jibiao Li
Dear all, I am new to Car-Parrinello Molecular Dynamics in QE. Which pseudopotentials are supported by Car-Parrinello Molecular Dynamics in QE? Norm-conserving pseudopotentials? ultrasoft pseudopotentials or PAW pseudopotentials? Best -- Dr. Jibiao Li, Department

[QE-users] What's the correct way to perform BOMD at a given temperature

2019-07-06 Thread Jibiao Li
Pd 4.1267105302.3825574360.00 0 0 Pd 6.8778508847.1476723070.00 0 0 K_POINTS automatic 4 4 1 0 0 0 -- Dr. Jibiao Li, Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongq

Re: [QE-users] read errors of phonon calcuations

2019-04-17 Thread Jibiao Li
. Jibiao Li, Lecturer Department of Material Science and Engineering Yangtze Normal University Juxian Dadao 16#, Fuling, Chongqing, China Email: jibia...@foxmail.com, jibiao...@hotmail.com Homepage: https://www.researchgate.net/profile/Jibiao_Li -- Original -- From

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