Re: [QE-users] pp.x does not seem to finish

2020-10-22 Thread Thanh-Nam Huynh
Dear Pietro and Marcelo Albuquerque, I followed your instructions and the job has done greatly. However. there is something weird in the output file. When I set OMP_NUM_THREADS=64 and ran mpirun -np 2 ... in the output, the first lines were printed out twice. Meanwhile, when I set OMP_NUM_THREADS=

[QE-users] pp.x does not seem to finish

2020-10-20 Thread Thanh-Nam Huynh
Dear colleagues, I ran a pp.x job in a workstation using 40 processors to get the potential of a surface slab a month ago. Despite that all the processors are running at 100%, the output file stops at these lines, and nothing has changed during this month. Writing data to file LaO_9layer_15vac.p

Re: [QE-users] Problems when running pp.x

2020-08-30 Thread Thanh-Nam Huynh
Dear Pietro, Thank you for your recommendation. I tried to upgrade to QE ver 6.6. It seemed to work fine. Regards, -- *Huynh Thanh-Nam* Department of Materials Science and Engineering, Chungnam National University Yuseong-gu, Daejeon 34134, Korea Tel: (+82) 010 5719 1521

Re: [QE-users] [QE-user] Problems when running pp.x

2020-08-24 Thread Thanh-Nam Huynh
Dear Pietro, Thank you for your answer. I tried to specify nx, ny and nz values; however, it did not work, even for single-core or multiple-core calculations. Do you have other recommendations? Best, Thanh-Nam -- *Huynh Thanh-Nam* Department of Materials Science and Engineering, Chungnam

Re: [QE-users] [QE-user] Problems when running pp.x

2020-08-19 Thread Thanh-Nam Huynh
0 O 0.2206290 0.2743370 0.3824120 0 0 0 K_POINTS {automatic} 6 6 1 0 0 0 And this is the pp.x input file: &INPUTPP outdir='.', prefix='LVO_slab_opt', plot_num=11, filplot='LaO_9layer_15vac.pot', / &PLOT iflag=3, output_f

[QE-users] [QE-user] Problems when running pp.x

2020-08-19 Thread Thanh-Nam Huynh
Dear colleagues, I ran into a problem when trying to run pp.x for my surface slab. The program stopped after a few seconds and error lines appeared, indicating two errors, namely: free() invalid memory, and munmap_chunk() invalid pointer. I did some research and realized that it was the problem