Re: [Pw_forum] Single molecules under high pressure-reg

2017-03-10 Thread Vincenzo Verdolino
s 344, Issue 1-2, 22, 2008 135-141 where employing a polarizable continuum model and implementing the analytic derivative of the quantic repulsion energy we gave a qualitative description of a single molecule confined in a “critical” condensed medium. Vincenzo Verdolino, PhD Computer Sc

Re: [Pw_forum] Dissociation on metallic surface

2017-02-28 Thread Vincenzo Verdolino
>> field >> >> What would be your best approach? >> >> Sorry for the very open question but we could go in details while discussing >> >> Thank you all and best regards >> >> Vincenzo Verdolino >> >> >> >> >>

[Pw_forum] Dissociation on metallic surface

2017-02-26 Thread Vincenzo Verdolino
all and best regards Vincenzo Verdolino Vincenzo Verdolino, PhD Computer Science Department, Università della Svizzera italiana - ETH Via Giuseppe Buffi 13, Lugano 6900 Switzerland Phone: +41 58 666 48 11 Skype: vincenzo.verdolino e-mail: verdo...@chem.phys.ethz.ch <mailto:ve

[Pw_forum] Dissociation on metallic surface

2017-02-26 Thread Vincenzo Verdolino
all and best regards Vincenzo Verdolino Inviato da iPhone ___ Pw_forum mailing list Pw_forum@pwscf.org http://pwscf.org/mailman/listinfo/pw_forum

Re: [Pw_forum] VC_relax

2016-03-31 Thread Vincenzo Verdolino
Dear, You should try to set the cutoff parameter to higher energy. Not sure if you specified the pseudopotential in your original email but i would set the parameter initially arount 50 Ry. Moreover you should check convergency on this number doing single point at different cutoff values and

[Pw_forum] convergence problem of FePc molecule

2014-09-01 Thread Vincenzo Verdolino
Hi, i completely agree with Thomas. As I understand this should not be a metal and you should not encounter troubles integrating around the Fermi level. So I would not specify smearing and degauss (which should be around 0.01 anyway if you really have to). Moreover, I am not entirely sure about

[Pw_forum] Fwd: Phonon dispersion from using matdyn.x

2014-09-01 Thread Vincenzo Verdolino
nt to sample the z-direction. I have fully relaxed the structure using > multiple steps of vc-relax and relax (repeating them couple of times). I > am attaching my pw.out file with this mail to get the idea of forces and > stress. > > Thanks, > ANkit Jain > > > On Sun, Aug

[Pw_forum] Fwd: Phonon dispersion from using matdyn.x

2014-08-31 Thread Vincenzo Verdolino
hr=1.0d-12 in the > pw.in file. > My kgrid is 14*12*1 in the pw.in file. > > Thanks, > Ankit Jain > > > > On Sun, Aug 31, 2014 at 1:13 PM, Vincenzo Verdolino < > vincenzo.verdolino at gmail.com> wrote: > >> Dear, >> >> I have similar issues so i

[Pw_forum] Fwd: Phonon dispersion from using matdyn.x

2014-08-31 Thread Vincenzo Verdolino
Dear, I have similar issues so i am not sure to be able to help you. First thing that i would try is to check if phonon calculations at a q point where matdyn gives you negative is correct or not. If yes that means that you k-samplin is good enough and it is only a matter of q mash for the

[Pw_forum] space group bug?

2014-08-28 Thread Vincenzo Verdolino
It is not a bug. If you check your input file and you change the ireducible zone representation you should look at your input original structure. If you run an scf calculation and you look at the output you have a changed representation which is by default the minimal one. If you carefully look

[Pw_forum] BOMD simulations

2014-08-28 Thread Vincenzo Verdolino
Dear all, Still waiting for some good advice on that topic! Thank you all V Sent from my iPhone > On 27/ago/2014, at 10:56, Vincenzo Verdolino gmail.com> wrote: > > Dear all, > > while doing my BO molecular dynamic simulations I realized that sometimes the >

[Pw_forum] Ph.x code help

2014-08-27 Thread Vincenzo Verdolino
a general rule of thumb that I can use to help guide me for the > future? > > > > Thanks, > > Adib Samin > > > > > > > > > From: pw_forum-bounces at pwscf.org on behalf > of Vincenzo Verdolino > Sent: Wednesday, August 27, 2

[Pw_forum] BOMD simulations

2014-08-27 Thread Vincenzo Verdolino
Dear all, while doing my BO molecular dynamic simulations I realized that sometimes the scf iteration doesn't converge in 100 or even 200 steps. My job approach is to resubmit every n time steps restarting from the previous well completed one. Of course if the previous one did not converged also

[Pw_forum] Ph.x code help

2014-08-27 Thread Vincenzo Verdolino
_ > > From: pw_forum-bounces at pwscf.org on > > behalf > of Samin, Adib J. > > Sent: Tuesday, August 26, 2014 11:08 AM > > To: PWSCF Forum > > Subject: Re: [Pw_forum] Ph.x code help > > > > Thank you so much for all your help. I was finally

[Pw_forum] Fwd: Band calculation gets terminated

2014-08-26 Thread Vincenzo Verdolino
Hi Could you paste your input file please?? Sent from my iPhone > On 26/ago/2014, at 18:28, Aditya Putatunda > wrote: > > Hello all, > Sorry to state, but I got no reply. I am still getting the same error while > doing nscf for the DOS calculations. Please help me figure out the problem >

[Pw_forum] Ph.x code help

2014-08-26 Thread Vincenzo Verdolino
tly attempting to run dynmat.x to diagonalize the matrix but I am > concerned because I don't see the matrix. > > Thanks, > > Adib Samin > > > > > > > > From: pw_forum-bounces at pwscf.org on behalf > of Vi

[Pw_forum] Ph.x code help

2014-08-26 Thread Vincenzo Verdolino
0.375 3.00 >>0.125 0.375 0.625 6.00 >>0.125 0.375 0.875 6.00 >>0.125 0.625 0.625 3.00 >>0.375 0.375 0.375 1.00 >>0.3750000 0.3750000 0.625 3.00 >> >> >> T

[Pw_forum] Ph.x code help

2014-08-26 Thread Vincenzo Verdolino
3.00 >>0.125 0.375 0.625 6.00 >>0.125 0.375 0.875 6.00 >>0.125 0.625 0.625 3.00 >>0.375 0.375 0.375 1.00 >>0.375 0.375 0.625 3.00 >> Thanks, >> Adib Samin >

[Pw_forum] Ph.x code help

2014-08-26 Thread Vincenzo Verdolino
echanical Engineering > > The Ohio State University > > ? > > > > > > -- > *From:* pw_forum-bounces at pwscf.org on > behalf > of Vincenzo Verdolino > *Sent:* Tuesday, August 26, 2014 5:38 AM > *To:* PWSCF

[Pw_forum] Ph.x code help

2014-08-26 Thread Vincenzo Verdolino
Dear, just make sure you cp -r -f SIPH.save /nfs/11/osu7834/ sometimes it happens that your outir in the scf calculation is not the same specified in your ph.x calculation could you also paste the scf.in job file? thanks vincenzo On Mon, Aug 25, 2014 at 10:07 PM, Samin, Adib J. < samin.2

[Pw_forum] Phonon calculation

2014-08-26 Thread Vincenzo Verdolino
linear wereas acustic should but this coud be a q-mash issue I will keep u up to date Vincenzo Sent from my iPhone > On 25/ago/2014, at 16:25, Xiaolong Zhang wrote: > > Dear Vincenzo Verdolino, > > Same problem here, and this could be version dependent. I tested a sys

[Pw_forum] Phonon calculation

2014-08-25 Thread Vincenzo Verdolino
; BUt I can not get the idea why.I hope some senior user can give insight > comment on this question > the Blog web is http://blog.sina.com.cn/s/blog_5f15ead20101rhyj.html > > jzlhubei at gmail.com > > From: Vincenzo Verdolino > Date: 2014-08-25 17:05 > To: dalcorso; PWS

[Pw_forum] Phonon calculation

2014-08-25 Thread Vincenzo Verdolino
, 2014-08-25 at 07:25 +0200, Vincenzo Verdolino wrote: > > ___ > > Pw_forum mailing list > > Pw_forum at pwscf.org > > http://pwscf.org/mailman/listinfo/pw_forum > > -- > Andrea Dal CorsoTel. 0039-040-3787428

[Pw_forum] Phonon calculation

2014-08-25 Thread Vincenzo Verdolino
Dear QE community, I am dealing with phonon calculations on ferromagnetic bcc iron. I am trying to reproduce results published by Dal Corso and Gironcoli on Phys Rew B 62 (1) 2000. I did several testing including K-points sampling, kinetic cut off and augmented charges, LDA and BPE potentials

[Pw_forum] lattice parameter in 'vc-relax' mode doesn't change

2014-08-19 Thread Vincenzo Verdolino
As Paolo was mentioning I would suggest you to grep -A 3 'CELL_PARAMETERS' output.out you should get something like CELL_PARAMETERS (alat= 22.67671359) 0.971595358 -0.004204137 0.034718207 -0.003973715 0.993274472 -0.003814071 0.073550426 -0.008394064 2.103660061 --

[Pw_forum] Smearing difference

2013-10-30 Thread Vincenzo Verdolino
You should give a look to this interesting focus on the argument http://qe-forge.org/pipermail/pw_forum/2005-October/077749.html Anyway, could you specify if your system is ferromagnetic or what and what's your criteria to say that the difference of the two magnetization predicted are big?

[Pw_forum] error in routine electrons

2013-07-05 Thread Vincenzo Verdolino
%% -- any suggestion?? Thank you all Vincenzo On Mon, Jul 1, 2013 at 7:49 PM, Lorenzo Paulatto < lorenzo.paulatto at impmc.upmc.fr> wrote: > On 07/01/2013 12:26 PM, Vincenzo Verdolino wrote: > > > Here is part of my input file > > Guess: I

[Pw_forum] error in routine electrons

2013-07-01 Thread Vincenzo Verdolino
Thanks Paolo, I'll give a try to this s well and let you all know how it works Vincenzo On Mon, Jul 1, 2013 at 3:15 PM, Paolo Giannozzi wrote: > On Mon, 2013-07-01 at 14:35 +0200, Vincenzo Verdolino wrote: > > > thank you so much. I was sure that the problem was something > &

[Pw_forum] error in routine electrons

2013-07-01 Thread Vincenzo Verdolino
gt; > HTH > > Giuseppe > > On Monday 01 July 2013 12:26:13 Vincenzo Verdolino wrote: > > Dear, > > > > may be my issue is very very stupid and I apologize in advance if that's > > the ca

[Pw_forum] error in routine electrons

2013-07-01 Thread Vincenzo Verdolino
Dear, may be my issue is very very stupid and I apologize in advance if that's the case. However, I'm facing with errors in electron routine in pw.x Here is part of my input file --- /

[Pw_forum] Iron surface Molecular Dynamics

2013-05-08 Thread Vincenzo Verdolino
H atoms involved) a > Born-Oppenheimer MD with pw.x as a good solution... > HTH > Giuseppe > > On Wednesday 08 May 2013 16:00:01 Vincenzo Verdolino wrote: >> Dear all, >> >> I am dealing with Iron surface catalyst and I'm trying to run MD simulation >&g

[Pw_forum] Iron surface Molecular Dynamics

2013-05-08 Thread Vincenzo Verdolino
Dear all, I am dealing with Iron surface catalyst and I'm trying to run MD simulation with cp.x Here is My Input file pseudo_dir = '/cluster/home/chab/verdoliv/espresso/pseudo/', outdir='/cluster/work/scr1/verdoliv/Initial_wavefunction_min/output'