[QE-users] Question regarding mixing of PBE and PBESOL PP

2019-05-03 Thread Yeon, Jejoon
Hello I ran several DFTs few times before, but I only have limited amount of knowledge and experience in DFTs. I have Pyrope (Mg3Al2Si3O12) and Grossular (Ca3Al2Si3O12) unit cell, and wish to preform relax and vc-relax. After I get the relaxed atomic structure and cell size, I wish to make a

Re: [QE-users] Question regarding mixing of PBE and PBESOL PP

2019-05-04 Thread Yeon, Jejoon
09 USA office: Rm. 300 Olin Physical Lab On Sat, May 4, 2019 at 12:27 AM Yeon, Jejoon mailto:jy...@udel.edu>> wrote: Hello I ran several DFTs few times before, but I only have limited amount of knowledge and experience in DFTs. I have Pyrope (Mg3Al2Si3O12) a

[QE-users] unknown cell_dofree ibrav error while vc-relax

2019-05-31 Thread Yeon, Jejoon
Hello This is somewhat elementary question, but I'm not sure what is wrong with my setting. I'm trying to perform vc-relax of calcium silicate structure using pbesol-kjpaw. This unitcell is monoclinic with unique axis B, which has a dimension of: a=5.575699 b=6.815574 c=10.522854 alpha=90.

Re: [QE-users] unknown cell_dofree ibrav error while vc-relax

2019-06-03 Thread Yeon, Jejoon
cell_dofree ibrav error while vc-relax On Fri, May 31, 2019 at 9:28 PM Yeon, Jejoon mailto:jy...@udel.edu>> wrote: from init_dofree : error # 1 unknown cell_dofree ibrav go into Modules/cell_base.f90, search for subroutine init_dofree. At the very beginning:

[QE-users] Question about restarting relaxation jobs

2019-07-06 Thread Yeon, Jejoon
Hello I have very small amount of experience using QE, so please excuse my beginner question. I'm about to start relaxation of big crystal structure, and I wish to make my QE relaxation jobs ready for restart. Here are my questions: 1) According to "restarting" section from manual, (https://

Re: [QE-users] Question about restarting relaxation jobs

2019-07-08 Thread Yeon, Jejoon
have to create the new outdir befor restarting and copy there all the data of the previous calculation i.e. the prefix.save directory. 5) don't complicate things too much Pietro On 7/6/19 3:59 PM, Yeon, Jejoon wrote: Hello I have very small amount of experience using QE, so please e

Re: [QE-users] Question about restarting relaxation jobs

2019-07-08 Thread Yeon, Jejoon
onds the program takes to make an scf loop and set smax_seconds to one week minus that time. This already very conservative, no need to use a longer time. 3) do not change the prefix name ... To restart the program will look for a directory called prefix.save if you change the prefix the progra

Re: [QE-users] Question about restarting relaxation jobs

2019-07-08 Thread Yeon, Jejoon
ally) just copy the whole prefix.save directory into new_prefix.save directory On 08/07/19 21:22, Yeon, Jejoon wrote: 1) no it's not correct. prefix.EXIT is a file that the user creates to make the program stop before completion. When the program finds this file in the outdir or in th

[QE-users] Can we calculate pressure from just relaxation result?

2019-09-16 Thread Yeon, Jejoon
Hello I have some relaxation (not vc-relax) output files of the same unit cell, but with different volume. I used fractional coordinates (= crystal coordinates) and just slightly modified the cell parameters to compress / expand the volume, to calculate potential energy at given fixed volume c

[QE-users] What might be the best way to calculate equation of state of crystal unitcell in current QE?

2019-09-27 Thread Yeon, Jejoon
Hello So far, when I calculate equation of state, I used series of relax calculations. 1) Download crystal structure. 2) Run relax 3) Run vc-relax based on result of 2) 4) Get crystal coordinate (= fractional coordinate) of 3) 5) Based on optimized cell info from 3), calculate cell parameters (or

[QE-users] Question regarding resource control for QE calculation

2019-10-09 Thread Yeon, Jejoon
Hello I'm not familiar with QE yet, so I'm not 100% sure about what might be the most efficient setting for my QE simulations. So far I submitted QE jobs based on very rough estimation for cores and memory. But now, I wish to learn more about how can I submit my relax/vc-relax jobs with the mos

[QE-users] Question about NEB

2019-11-08 Thread Yeon, Jejoon
Hello I'm attempting to calculate Mg ion vacancy migration inside Pyrope unit cell. System has total 159 atoms, beginning and end geometry is optimized. I attached input file in this email. For intermediate image, I'm using one coordinate that I acquired from crashed NEB case. This is not perfe