Re: [Pw_forum] modeling open-shell molecules on metal surfaces

2015-02-04 Thread Sergi Vela
I managed to converge the calculation. There was an error on the structure caused by the software that I used. Without your help I couldn't have seen it. Your advices regarding convergence will also be very helpful. Thanks, Sergi 2015-02-03 15:40 GMT+01:00 Sergi Vela : > Thank you all for your s

Re: [Pw_forum] modeling open-shell molecules on metal surfaces

2015-02-03 Thread Sergi Vela
Thank you all for your suggestions, you've given me a lot to work on! I'll let you know about the results. Cheers, Sergi 2015-02-03 15:00 GMT+01:00 xiaochuan Ge : > There is another easier solution but I have never tested. The default > startingwfc is "atomic + random", instead one could try to

Re: [Pw_forum] modeling open-shell molecules on metal surfaces

2015-02-03 Thread xiaochuan Ge
There is another easier solution but I have never tested. The default startingwfc is "atomic + random", instead one could try to use "random". === Dr. Xiaochuan Ge (Giovanni) Center for Functional Nanomaterials Brookhaven national laboratory === On 3 February 2015

Re: [Pw_forum] modeling open-shell molecules on metal surfaces

2015-02-03 Thread Pu ZHANG
Dear all, I'm just curious about Xiaochuan's solution. It would be Interesting and useful to be able to specify the initial configuration in such a flexible way. As I understand from experience in other codes, it's trivial to set up the occupation for the whole system, however rather than for sepa

Re: [Pw_forum] modeling open-shell molecules on metal surfaces

2015-02-03 Thread xiaochuan Ge
Dear Sergi Vela, I have encountered similar problems before. To solve your trouble I think the main question is: what is the converged electronic configuration you are expecting? I notice that your system is made by a gold slab plus a C2S3N3 molecule. The latter being isolated contains odd number

Re: [Pw_forum] modeling open-shell molecules on metal surfaces

2015-02-03 Thread Sergi Vela
Dear Guido and Giuseppe, Thank you both for your replies. The structure should be ok, it represents an organic molecule between 2 gold electrodes. You should get something like the image I attach (do you?). It is a rather standard scheme, as you may also see in: http://pubs.acs.org/doi/abs/10.10

Re: [Pw_forum] modeling open-shell molecules on metal surfaces

2015-02-03 Thread Giuseppe Mattioli
Dear Sergi It seems that you bounce between more than one electronic configuration at every scf step. This is far from uncommon in the case of molecular open shell systems. :-( I can add one or two things to Guido's good advice. > I've tried several tricks to try to improve electronic structure

Re: [Pw_forum] modeling open-shell molecules on metal surfaces

2015-02-03 Thread Guido Fratesi
Dear Sergi Vela, are you really sure about input coordinates? I executed "xcrysden --pwi Test.input" and found a rather strange structure! Also, do you really need to use ibrav=0 with the axes as you defined? It the substrate is Au(111) you could use a more symmetric unit cell. Then: k-point me

[Pw_forum] modeling open-shell molecules on metal surfaces

2015-02-03 Thread Sergi Vela
Hi all, I'm having a lot of troubles in modeling the adsorption of molecules on surfaces. I've quite a lot of experience with QE when working with crystals made of open-shell molecules but I'm not familiar with the description of metal surfaces. First of all, I'm using Qespresso v.5.1.1 I succee