Re: [QE-users] Running efficiently on multiple nodes

2020-11-06 Thread Baer, Bradly
Baer, Bradly ; Quantum ESPRESSO users Forum mailto:users@lists.quantum-espresso.org>> Subject: Re: [QE-users] Running efficiently on multiple nodes Are there fast communications between the two nodes? if not, the parallel distributed 3D FFT will be very slow (note the time taken by fft_scatt_yz

Re: [QE-users] Running efficiently on multiple nodes

2020-11-05 Thread Antoine Jay via users
: [QE-users] Running efficiently on multiple nodesĀ Are there fast communications between the two nodes? if not, the parallel distributed 3D FFT will be very slow (note the time taken by fft_scatt_yz). You might find convenient to exploit k-point parallelization, that requires much less

Re: [QE-users] Running efficiently on multiple nodes

2020-11-05 Thread Michal Krompiec via users
gt; Interdisciplinary Materials Science > Vanderbilt University > > > -- > *From:* Paolo Giannozzi > *Sent:* Thursday, November 5, 2020 3:54 PM > *To:* Baer, Bradly ; Quantum ESPRESSO users > Forum > > *Subject:* Re: [QE-users] Running efficiently on multiple nodes >

Re: [QE-users] Running efficiently on multiple nodes

2020-11-05 Thread Baer, Bradly via users
alf of Paolo Giannozzi mailto:p.gianno...@gmail.com>> Sent: Thursday, November 5, 2020 10:01 AM To: Quantum ESPRESSO users Forum mailto:users@lists.quantum-espresso.org>> Subject: Re: [QE-users] Running efficiently on multiple nodes On Thu, Nov 5, 2020 at 3:05 PM Baer, Bradly mailto:bradly.b.b.

Re: [QE-users] Running efficiently on multiple nodes

2020-11-05 Thread Paolo Giannozzi via users
> *Sent:* Thursday, November 5, 2020 10:01 AM > *To:* Quantum ESPRESSO users Forum > *Subject:* Re: [QE-users] Running efficiently on multiple nodes > > On Thu, Nov 5, 2020 at 3:05 PM Baer, Bradly > wrote: > > > *Pseudo file Ga.pbe-dn-kjpaw_psl.1.0.0.UPF has been

Re: [QE-users] Running efficiently on multiple nodes

2020-11-05 Thread Baer, Bradly via users
Vanderbilt University From: users on behalf of Paolo Giannozzi Sent: Thursday, November 5, 2020 10:01 AM To: Quantum ESPRESSO users Forum Subject: Re: [QE-users] Running efficiently on multiple nodes On Thu, Nov 5, 2020 at 3:05 PM Baer, Bradly

Re: [QE-users] Running efficiently on multiple nodes

2020-11-05 Thread Paolo Giannozzi
> *From:* users on behalf of > Paolo Giannozzi > *Sent:* Thursday, November 5, 2020 2:33 AM > *To:* Quantum ESPRESSO users Forum > *Subject:* Re: [QE-users] Running efficiently on multiple nodes > > On Wed, Nov 4, 2020 at 11:28 PM Baer, Bradly > wrote: > > > Now

Re: [QE-users] Running efficiently on multiple nodes

2020-11-05 Thread Baer, Bradly
Forum Subject: Re: [QE-users] Running efficiently on multiple nodes Dear Brad, Your missing CRASH file remembers me when I made QE eat up all disk space on the disk used to be used. End of logs and a lot more were missing, only "df ." gave me the hint. So the naive question raises: is i

Re: [QE-users] Running efficiently on multiple nodes

2020-11-05 Thread Tamas Karpati
- > Bradly Baer > Graduate Research Assistant, Walker Lab > Interdisciplinary Materials Science > Vanderbilt University > > > ____________ > From: users on behalf of Paolo > Giannozzi > Sent: Thursday, November 5, 2020 2:33 AM > To: Quantum ESPRESSO

Re: [QE-users] Running efficiently on multiple nodes

2020-11-05 Thread Baer, Bradly
, 2020 2:33 AM To: Quantum ESPRESSO users Forum Subject: Re: [QE-users] Running efficiently on multiple nodes On Wed, Nov 4, 2020 at 11:28 PM Baer, Bradly mailto:bradly.b.b...@vanderbilt.edu>> wrote: Now that I have two nodes, the script for a single node results in a crash s

Re: [QE-users] Running efficiently on multiple nodes

2020-11-05 Thread Paolo Giannozzi
On Wed, Nov 4, 2020 at 11:28 PM Baer, Bradly wrote: > Now that I have two nodes, the script for a single node results in a crash > shortly after reading in the pseudopotentials. > which version of QE are you using, and which crash do you obtain, with which executable? Paolo -- Paolo

[QE-users] Running efficiently on multiple nodes

2020-11-04 Thread Baer, Bradly
Hello, I am hoping to get some advice on how to efficiently run QE on multiple nodes in a cluster. I have a simulation that I have been running on 1node/16cores that I am looking to scale up to 2nodes/32cores. Our cluster has a gpfs networked filesystem that has previously caused performance