Re: [QE-users] pp.x does not seem to finish

2020-10-22 Thread Pietro Delugas
sorry I thought the execution of PW went fine. It seems you have compiled the program for serial execution and then linked to parallel libraries. you should configure for parallel execution and recompile the codes. if it doesn't work, could you send me the make.inc file for checking  ?

Re: [QE-users] pp.x does not seem to finish

2020-10-22 Thread Paolo Giannozzi
On Thu, Oct 22, 2020 at 10:17 AM Thanh-Nam Huynh wrote: > When I set OMP_NUM_THREADS=64 and ran > mpirun -np 2 ... > in the output, the first lines were printed out twice. > Meanwhile, when I set OMP_NUM_THREADS=1 and ran > mpirun -np 40 ... > every line was printed out 40 times in the output

Re: [QE-users] pp.x does not seem to finish

2020-10-22 Thread Thanh-Nam Huynh
Dear Pietro and Marcelo Albuquerque, I followed your instructions and the job has done greatly. However. there is something weird in the output file. When I set OMP_NUM_THREADS=64 and ran mpirun -np 2 ... in the output, the first lines were printed out twice. Meanwhile, when I set

Re: [QE-users] pp.x does not seem to finish

2020-10-21 Thread Marcelo Albuquerque
Hi, Thanh-Nam Huynh and Pietro. I agree with what Pietro wrote. But, please correct me if I'm wrong, I think that in a workstation like yours you should set OMP_NUM_THREADS=1, and run QE programs (compiled in parallel) as, for example, mpirun -np 40 pw.x -inp pw.in > pw.out Best wishes, *

Re: [QE-users] pp.x does not seem to finish

2020-10-20 Thread Pietro Delugas
Hi no it shouldn't take that long. According to the output you should be   running on 5120 processors, that would indeed be a terrific workstation :-). the openmp version of the code is a little bit tricky, if the number of available threads is not specified it tries to as many as it

[QE-users] pp.x does not seem to finish

2020-10-20 Thread Thanh-Nam Huynh
Dear colleagues, I ran a pp.x job in a workstation using 40 processors to get the potential of a surface slab a month ago. Despite that all the processors are running at 100%, the output file stops at these lines, and nothing has changed during this month. Writing data to file