What do I need to do?

I deleted some folders/files outside of Versions but now I cannot
commit my project back to the repository.

Also, I added some folders but they have the same name as the ones I
deleted.

For example "panels" (Drupal module) is a folder I deleted outside of
Versions, then downloaded the most recent version of panels from the
developer, hence the reason the new folder's name is the same.

Thanks,

DC

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