Hello, I'm having a strange problem using wget-1.9.1-r2 or wget-1.9-r2. I'm working behind a proxy (that has been duly configured with export http_proxy) and connecting to ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.fasta. gz to get the newest Swissprot database. I enabled the debug output of wget and that's what I get (see appended output).
Strangely after the last "Closing fd 4" nothing happens anymore... The wget process is still runnin in memory and it just "sits" there forever... Does somebody have an idea or a hint? Maybe this is a known issue, but I haven't found a clue yet. My searches on this mailing list have not been fruitful but my search keywords were not very precise. Best regards, Patrick Pirrotte Appended output: DEBUG output created by Wget 1.9.1 on linux-gnu. Using `/usr/local/mascot/sequence/Sprot/incoming/.listing' as listing tmp file. --18:58:13-- ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/ => `/usr/local/mascot/sequence/Sprot/incoming/.listing' Resolving ftp.ebi.ac.uk... 193.62.196.103 Caching ftp.ebi.ac.uk => 193.62.196.103 Connecting to ftp.ebi.ac.uk[193.62.196.103]:21... connected. Created socket 3. Releasing 0x807f6e0 (new refcount 1). Logging in as anonymous ... 220 ftp1.ebi.ac.uk FTP server (Version wu-2.6.2(2) Wed Aug 20 08:58:45 BST 2003) ready. --> USER anonymous 331 Guest login ok, send your complete e-mail address as password. --> PASS -wget@ 230 Guest login ok, access restrictions apply. Logged in! ==> SYST ... --> SYST 215 UNIX Type: L8 Version: BSD-198911 done. ==> PWD ... --> PWD 257 "/" is current directory. done. ==> TYPE I ... --> TYPE I 200 Type set to I. done. changing working directory Prepended initial PWD to relative path: pwd: '/' old: 'pub/databases/uniprot/knowledgebase' new: '/pub/databases/uniprot/knowledgebase' ==> CWD /pub/databases/uniprot/knowledgebase ... --> CWD /pub/databases/uniprot/knowledgebase 250 CWD command successful. done. ==> PASV ... --> PASV 227 Entering Passive Mode (193,62,196,103,190,223) Created socket 4. done. ==> LIST ... --> LIST 150 Opening BINARY mode data connection for /bin/ls. done. [ <=> ] 1,133 --.--K/s Closing fd 4 226 Transfer complete. 18:58:16 (66.84 KB/s) - `/usr/local/mascot/sequence/Sprot/incoming/.listing' saved [1133] PLAINFILE; perms 664; month: Jul; day: 28; time: 10:57:00 (no yr); PLAINFILE; perms 664; month: Dec; day: 7; time: 15:32:00 (no yr); DIRECTORY; perms 775; month: Jan; day: 4; time: 11:25:00 (no yr); DIRECTORY; perms 775; month: Jul; day: 19; year: 2004 (no tm); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:37:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:39:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:40:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:40:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:42:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); Wrote HTML-ized index to `/usr/local/mascot/sequence/Sprot/incoming/index.html' [2655]. Closing fd 3 DEBUG output created by Wget 1.9.1 on linux-gnu. Using `/usr/local/mascot/sequence/Sprot/incoming/.listing' as listing tmp file. --18:58:16-- ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.fasta. gz => `/usr/local/mascot/sequence/Sprot/incoming/.listing' Resolving ftp.ebi.ac.uk... 193.62.196.103 Caching ftp.ebi.ac.uk => 193.62.196.103 Connecting to ftp.ebi.ac.uk[193.62.196.103]:21... connected. Created socket 3. Releasing 0x807f748 (new refcount 1). Logging in as anonymous ... 220 ftp1.ebi.ac.uk FTP server (Version wu-2.6.2(2) Wed Aug 20 08:58:45 BST 2003) ready. --> USER anonymous 331 Guest login ok, send your complete e-mail address as password. --> PASS -wget@ 230 Guest login ok, access restrictions apply. Logged in! ==> SYST ... --> SYST 215 UNIX Type: L8 Version: BSD-198911 done. ==> PWD ... --> PWD 257 "/" is current directory. done. ==> TYPE I ... --> TYPE I 200 Type set to I. done. changing working directory Prepended initial PWD to relative path: pwd: '/' old: 'pub/databases/uniprot/knowledgebase' new: '/pub/databases/uniprot/knowledgebase' ==> CWD /pub/databases/uniprot/knowledgebase ... --> CWD /pub/databases/uniprot/knowledgebase 250 CWD command successful. done. ==> PASV ... --> PASV 227 Entering Passive Mode (193,62,196,103,195,53) Created socket 4. done. ==> LIST ... --> LIST 150 Opening BINARY mode data connection for /bin/ls. done. [ <=> ] 1,133 --.--K/s Closing fd 4 226 Transfer complete. 18:58:20 (101.15 KB/s) - `/usr/local/mascot/sequence/Sprot/incoming/.listing' saved [1133] PLAINFILE; perms 664; month: Jul; day: 28; time: 10:57:00 (no yr); PLAINFILE; perms 664; month: Dec; day: 7; time: 15:32:00 (no yr); DIRECTORY; perms 775; month: Jan; day: 4; time: 11:25:00 (no yr); DIRECTORY; perms 775; month: Jul; day: 19; year: 2004 (no tm); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:37:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:39:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:40:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:40:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:42:00 (no yr); PLAINFILE; perms 664; month: Jan; day: 4; time: 14:36:00 (no yr); Removed `/usr/local/mascot/sequence/Sprot/incoming/.listing'. --18:58:20-- ftp://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.fasta. gz => `/usr/local/mascot/sequence/Sprot/incoming/uniprot_sprot.fasta.gz' ==> CWD not required. ==> PASV ... --> PASV 227 Entering Passive Mode (193,62,196,103,160,7) Created socket 4. done. ==> RETR uniprot_sprot.fasta.gz ... --> RETR uniprot_sprot.fasta.gz 150 Opening BINARY mode data connection for uniprot_sprot.fasta.gz (28899327 bytes). done. Length: 28,899,327 100%[=============================================================>] 28,899,327 155.11K/s ETA 00:00 Closing fd 4
