Re: [Yade-users] [Question #244634]: only 1 core working out of 32

2014-03-01 Thread Giulia Macaro
Question #244634 on Yade changed: https://answers.launchpad.net/yade/+question/244634 Giulia Macaro posted a new comment: I'm using Ubuntu 12.04 (precise) 64-bit / Kernel Linux 3.8.0-36-generic / GNOME 3.4.2 running on an IntelĀ® Xeon(R) CPU E5-2687W v2 @ 3.40GHz x17. And the version of ope

Re: [Yade-users] [Question #244634]: only 1 core working out of 32

2014-02-28 Thread Giulia Macaro
Question #244634 on Yade changed: https://answers.launchpad.net/yade/+question/244634 Giulia Macaro posted a new comment: Also Christian's suggestion (#10) solved my problem, but there isn't any "This solved my problem" button next to it. Thanks. -- You received this q

Re: [Yade-users] [Question #244634]: only 1 core working out of 32

2014-02-28 Thread Giulia Macaro
Question #244634 on Yade changed: https://answers.launchpad.net/yade/+question/244634 Giulia Macaro confirmed that the question is solved: Thanks Anton Gladky, that solved my question. -- You received this question notification because you are a member of yade-users, which is an answer contact

Re: [Yade-users] [Question #244634]: only 1 core working out of 32

2014-02-28 Thread Giulia Macaro
Question #244634 on Yade changed: https://answers.launchpad.net/yade/+question/244634 Status: Answered => Solved Giulia Macaro confirmed that the question is solved: Sorry, maybe I didn't explained myself correctly. The machine has 32 CPU when HyperThreading is enabled, 16 CPU wh

Re: [Yade-users] [Question #244634]: only 1 core working out of 32

2014-02-28 Thread Giulia Macaro
Question #244634 on Yade changed: https://answers.launchpad.net/yade/+question/244634 Giulia Macaro posted a new comment: Sorry Christian, I've seen your reply after I had sent mine. I've added os.system("taskset -p 0xff %d" % os.getpid()) to the top of the checkPerf.py scr

Re: [Yade-users] [Question #244634]: only 1 core working out of 32

2014-02-28 Thread Giulia Macaro
Question #244634 on Yade changed: https://answers.launchpad.net/yade/+question/244634 Giulia Macaro posted a new comment: OpenBLAS is 0.1alpha2.2-3 I'm now understanding a bit better that the email Anton linked. I've just realized that I don't have openblas installed in the old

[Yade-users] [Question #244634]: only 1 core working out of 32

2014-02-26 Thread Giulia Macaro
New question #244634 on Yade: https://answers.launchpad.net/yade/+question/244634 Hi all, I'm running yade-1.07.0 --performance -j on a new Ubuntu machine. The machine has 32 cores (16 virtual), but no matter which number I specify with -j, yade only takes 1 core to run. I've checked the CPU

Re: [Yade-users] [Question #234062]: Track rotation of particle

2013-08-15 Thread Giulia Macaro
Question #234062 on Yade changed: https://answers.launchpad.net/yade/+question/234062 Giulia Macaro proposed the following answer: Hi, I think it's already there, you can track it directly from python with O.bodies[id].state.rot(), which gives a vector of the current rotation of the bo

Re: [Yade-users] [Question #220785]: Contact with AllowBiggerThanPeriod

2013-02-06 Thread Giulia Macaro
Question #220785 on Yade changed: https://answers.launchpad.net/yade/+question/220785 Status: Answered => Solved Giulia Macaro confirmed that the question is solved: Not only it happens for a specific size of the period, but also for a specific order in which the spheres are appended in

[Yade-users] [Question #220785]: Contact with AllowBiggerThanPeriod

2013-02-01 Thread Giulia Macaro
New question #220785 on Yade: https://answers.launchpad.net/yade/+question/220785 Hello, I've noticed a weird behaviour that I cannot explain. Below there is a simple script reproducing the problem. I have two spheres in a periodic cell. One sphere (blue in my script) is bigger than the perio

Re: [Yade-users] [Question #215877]: SIGKILL and possible memory leakage

2012-12-21 Thread Giulia Macaro
Question #215877 on Yade changed: https://answers.launchpad.net/yade/+question/215877 Status: Answered => Solved Giulia Macaro confirmed that the question is solved: Thanks Anton for trying my script. I have found that if I restart the pc just before starting the test and I do not

Re: [Yade-users] [Question #215877]: SIGKILL and possible memory leakage

2012-12-06 Thread Giulia Macaro
Question #215877 on Yade changed: https://answers.launchpad.net/yade/+question/215877 Giulia Macaro posted a new comment: At the beginning I decided to use more facets so that I could read the force acting on different layers of the vertical walls, and also the force at the centre and at the

Re: [Yade-users] [Question #215877]: SIGKILL and possible memory leakage

2012-12-06 Thread Giulia Macaro
Question #215877 on Yade changed: https://answers.launchpad.net/yade/+question/215877 Giulia Macaro posted a new comment: I was recording the total memory with sysstat, and the memory used only by Yade with the script given in the other bug, following the process id of Yade. The other

Re: [Yade-users] [Question #215877]: SIGKILL and possible memory leakage

2012-12-06 Thread Giulia Macaro
Question #215877 on Yade changed: https://answers.launchpad.net/yade/+question/215877 Giulia Macaro posted a new comment: Regarding the memory leakage described in https://bugs.launchpad.net/yade/+bug/1041084, I understood it only happens when erasing a body, doesn't it? -- You received

Re: [Yade-users] [Question #215877]: SIGKILL and possible memory leakage

2012-12-06 Thread Giulia Macaro
Question #215877 on Yade changed: https://answers.launchpad.net/yade/+question/215877 Status: Answered => Open Giulia Macaro is still having a problem: Hello, I have run more tx tests with only 5,000 spheres: I've restarted the computer, launched the test, and I have not opened a

[Yade-users] [Question #215877]: SIGKILL and possible memory leakage

2012-12-03 Thread Giulia Macaro
New question #215877 on Yade: https://answers.launchpad.net/yade/+question/215877 Hello, I am running a very long simulation, in which a big sphere is loaded on a packing of 50,000 smaller spheres settled under gravity force. After 4 days of running, the simulation ends without any particular re

Re: [Yade-users] [Question #207881]: Unphysical behaviour, and Verlet collision detection

2012-09-07 Thread Giulia Macaro
Question #207881 on Yade changed: https://answers.launchpad.net/yade/+question/207881 Giulia Macaro posted a new comment: Thank you all for your replies. I will try to play more with the time step and the loading velocity. And also I might try to reduce the scaling of the PSD to increase the

[Yade-users] [Question #207881]: Unphysical behaviour, and Verlet collision detection

2012-09-06 Thread Giulia Macaro
New question #207881 on Yade: https://answers.launchpad.net/yade/+question/207881 Hi, I am running a simulation in which a constant vertical velocity is applied to a non-dynamic cylindrical body laying on a packing of spheres with periodic boundaries. The velocity is applied through Translatio

Re: [Yade-users] [Question #197582]: "ForceContainer not thread-synchronized" with utils.unbalancedForce()

2012-05-25 Thread Giulia Macaro
Question #197582 on Yade changed: https://answers.launchpad.net/yade/+question/197582 Giulia Macaro confirmed that the question is solved: Thanks Klaus Thoeni, that solved my question. -- You received this question notification because you are a member of yade-users, which is an answer contact

Re: [Yade-users] [Question #197582]: "ForceContainer not thread-synchronized" with utils.unbalancedForce()

2012-05-25 Thread Giulia Macaro
Question #197582 on Yade changed: https://answers.launchpad.net/yade/+question/197582 Status: Answered => Solved Giulia Macaro confirmed that the question is solved: Yes, it only happened when the I called utils.unbalancedForce() from the terminal while the simulation was running. Th

[Yade-users] [Question #197582]: "ForceContainer not thread-synchronized" with utils.unbalancedForce()

2012-05-17 Thread Giulia Macaro
New question #197582 on Yade: https://answers.launchpad.net/yade/+question/197582 During the simulation, when I ask for the value of the unbalanced force with utils.unbalancedForce(), sometimes I get: "RuntimeError: ForceContainer not thread-synchronized; call sync() first!" If I continue calling

Re: [Yade-users] [Question #191926]: Running scripts remotely

2012-03-28 Thread Giulia Macaro
Question #191926 on Yade changed: https://answers.launchpad.net/yade/+question/191926 Giulia Macaro proposed the following answer: Hey Giuseppe, I use the command "screen", both from ubuntu and mac os terminal. After you download it, you open the terminal, type "screen", la

Re: [Yade-users] [Question #181411]: cylinder larger than half of the periodic cell

2012-03-09 Thread Giulia Macaro
Question #181411 on Yade changed: https://answers.launchpad.net/yade/+question/181411 Status: Answered => Solved Giulia Macaro confirmed that the question is solved: Thank you very much. I'll run more tests starting from that script and will investigate the results obtained. Giulia

Re: [Yade-users] [Question #181411]: cylinder larger than half of the periodic cell

2012-03-08 Thread Giulia Macaro
Question #181411 on Yade changed: https://answers.launchpad.net/yade/+question/181411 Status: Answered => Open Giulia Macaro is still having a problem: I'm sorry, but I don't see any attach button.. I think it's only for the bugs pages. I've sent the script to yo

Re: [Yade-users] [Question #181411]: cylinder larger than half of the periodic cell

2012-03-07 Thread Giulia Macaro
Question #181411 on Yade changed: https://answers.launchpad.net/yade/+question/181411 Status: Answered => Open Giulia Macaro is still having a problem: I'm using 3036, but I've commented the 'if(scene->Periodic)' condition in the Bo1_ChainedCylinder_Aabb (lin

Re: [Yade-users] [Question #181411]: cylinder larger than half of the periodic cell

2012-03-05 Thread Giulia Macaro
Question #181411 on Yade changed: https://answers.launchpad.net/yade/+question/181411 Status: Answered => Open Giulia Macaro is still having a problem: I didn't explain it correctly: the wire (ghost) cylinder is also in the real domain, and the full real cylinder sometime is somehow

Re: [Yade-users] [Question #181411]: cylinder larger than half of the periodic cell

2012-03-02 Thread Giulia Macaro
Question #181411 on Yade changed: https://answers.launchpad.net/yade/+question/181411 Status: Answered => Open Giulia Macaro is still having a problem: Hi Bruno, 1/ I've commented and it seems working: I have the bounding box and the interactions between cylinder and spheres. It wo

Re: [Yade-users] [Question #181411]: cylinder larger than half of the periodic cell

2012-03-01 Thread Giulia Macaro
Question #181411 on Yade changed: https://answers.launchpad.net/yade/+question/181411 Status: Solved => Open Giulia Macaro is still having a problem: I still have some problem with the cylinder. The bounding box for a chained cylinder is not implemented for periodic simulations. There

Re: [Yade-users] [Question #181411]: cylinder larger than half of the periodic cell

2011-12-21 Thread Giulia Macaro
Question #181411 on Yade changed: https://answers.launchpad.net/yade/+question/181411 Status: Answered => Solved Giulia Macaro confirmed that the question is solved: Thanks Chareyre, that solved my question. -- You received this question notification because you are a member of yade-us

Re: [Yade-users] [Question #181411]: cylinder larger than half of the periodic cell

2011-12-21 Thread Giulia Macaro
Question #181411 on Yade changed: https://answers.launchpad.net/yade/+question/181411 Giulia Macaro posted a new comment: Thank you very much. I am wondering if there is any difference in using the bottom wall as facets or as a box. I initially created it as facets to avoid that problem with

Re: [Yade-users] [Question #181411]: cylinder larger than half of the periodic cell

2011-12-16 Thread Giulia Macaro
Question #181411 on Yade changed: https://answers.launchpad.net/yade/+question/181411 Giulia Macaro posted a new comment: Yes, you are right, the problem is that even if I divide the cylinder is shorter ones, the last section of the cylinder+the rounded end is bigger that the width of the

Re: [Yade-users] [Question #181411]: cylinder larger than half of the periodic cell

2011-12-15 Thread Giulia Macaro
Question #181411 on Yade changed: https://answers.launchpad.net/yade/+question/181411 Giulia Macaro posted a new comment: The diameter is larger than the width of the periodic cell. The geometry is http://www.2shared.com/photo/LllAodFZ/frontView.html http://www.2shared.com/photo/afOWDQeN

[Yade-users] [Question #181411]: cylinder larger than half of the periodic cell

2011-12-09 Thread Giulia Macaro
New question #181411 on Yade: https://answers.launchpad.net/yade/+question/181411 I'm trying to model a cylinder lying on a sand sample. The sample has periodic boundaries only on the planes perpendicular to the cylinder axis. I've created a bigger periodic cell (with a very small thickness), a

Re: [Yade-users] [Question #151328]: Batch - how to kill one job only

2011-04-07 Thread Giulia Macaro
Question #151328 on Yade changed: https://answers.launchpad.net/yade/+question/151328 Giulia Macaro posted a new comment: ok, thank you! I'll try it -- You received this question notification because you are a member of yade-users, which is an answer contact for

Re: [Yade-users] [Question #151328]: Batch - how to kill one job only

2011-04-02 Thread Giulia Macaro
Question #151328 on Yade changed: https://answers.launchpad.net/yade/+question/151328 Status: Answered => Solved Giulia Macaro confirmed that the question is solved: Yes, I meant http://localhost:9080/ But it couldn't be loaded after I killed 2 of the 3 simulations. Anyway, the r

Re: [Yade-users] [Question #151328]: Batch - how to kill one job only

2011-04-02 Thread Giulia Macaro
Question #151328 on Yade changed: https://answers.launchpad.net/yade/+question/151328 Giulia Macaro posted a new comment: It worked, I think. And there is one simulation still running (I can see it from the system monitor). But now I can't load the http://localhost web page, to check stat

[Yade-users] [Question #151328]: Batch - how to kill one job only

2011-04-01 Thread Giulia Macaro
New question #151328 on Yade: https://answers.launchpad.net/yade/+question/151328 Hi all, I'm running 3 simulations in batch (in the same process). Is it possible to kill 2 of them and to continue to run only one? I guess that if I use $ kill PID it will kill the whole batch simulation, right?

Re: [Yade-users] [Question #138108]: issues with plotting (maybe due to matplotlib)

2010-12-18 Thread Giulia Macaro
Question #138108 on Yade changed: https://answers.launchpad.net/yade/+question/138108 Status: Answered => Open Giulia Macaro is still having a problem: Hey, I'm trying to install them, but I've got some errors: Err http://ppa.launchpad.net karmic/main Packages

Re: [Yade-users] [Question #138108]: issues with plotting (maybe due to matplotlib)

2010-12-17 Thread Giulia Macaro
Question #138108 on Yade changed: https://answers.launchpad.net/yade/+question/138108 Giulia Macaro gave more information on the question: Another person who's running yade on Ubuntu 9.10 has the same issue. If fixing it is too complicated, don't do it, I can work with that. Don't

Re: [Yade-users] [Question #138108]: issues with plotting (maybe due to matplotlib)

2010-12-17 Thread Giulia Macaro
Question #138108 on Yade changed: https://answers.launchpad.net/yade/+question/138108 Status: Answered => Open Giulia Macaro is still having a problem: It happens with every script, no matter what data I have. 1. It happens sooner when I click on the plot window (and use the subp

[Yade-users] [Question #138108]: issues with plotting (maybe due to matplotlib)

2010-12-17 Thread Giulia Macaro
New question #138108 on Yade: https://answers.launchpad.net/yade/+question/138108 Hi, I'm using yade-bzr2612 on ubuntu 9.10. The plot window crashes at some point almost in every simulation, regardless the simulation it's running. When it happens in the terminal I got: ERROR: An unexpected err

Re: [Yade-users] [Question #137230]: basic questions on law-test.py

2010-12-13 Thread Giulia Macaro
Question #137230 on Yade changed: https://answers.launchpad.net/yade/+question/137230 Status: Answered => Solved Giulia Macaro confirmed that the question is solved: Now (2612) it perfectly works. Thank you Giulia -- You received this question notification because you are a member of y

Re: [Yade-users] [Question #137230]: basic questions on law-test.py

2010-12-13 Thread Giulia Macaro
Question #137230 on Yade changed: https://answers.launchpad.net/yade/+question/137230 Giulia Macaro posted a new comment: Thank you, that is very helpful! But now I think there are some issues with qt.view, since when I run the script I get the displacements plotted, but I don't see the

[Yade-users] [Question #137230]: basic questions on law-test.py

2010-12-09 Thread Giulia Macaro
New question #137230 on Yade: https://answers.launchpad.net/yade/+question/137230 Hey, I am new to yade and I am starting from law-test.py (bzr2598). I have included the CohFrictMat and the Coesion moment law implemented by Chiara. But that is not the point. I am a bit confused regarding how La

[Yade-users] basic questions on law-test.py

2010-12-09 Thread Giulia Macaro
Hey, I am new to yade and I am starting from law-test.py (bzr2598). I have included the CohFrictMat and the Coesion moment law implemented by Chiara. But that is not the point. I am a bit confused regarding how LawTester actually works: - path() let me apply the displacement starting from the con

Re: [Yade-users] can't launch yade

2010-11-24 Thread Giulia Macaro
> If you compiled with PREFIX option, no need to "chown" /usr/local, as YADE > installs in this case in pointed directory only. > > If you have an opportunity, try to update distro, as most of us are working > on 10.04 and later. > > Anton > > > > On Wed,

[Yade-users] can't launch yade

2010-11-24 Thread Giulia Macaro
Hey, I'm Giulia, I've just started my DPhil at the University of Oxford, and I will be using YADE for my research. But I can't launch the program. I have Ubuntu 9.10, yade bzr2567, python 2.6.4, and I have tried in the debug mode as well. I got the trunk version of yade, through *bzr checkout lp