Hi Felix, Thanks for the advice. I can certainly try that, though I was hoping that I wouldn't have to do a full package installation.
The Seisan libraries were compiled in the same environment. Brian -----Original Message----- From: seisan-boun...@geo.uib.no <seisan-boun...@geo.uib.no> On Behalf Of Felix Halpaap Sent: 14 October 2020 13:17 To: seisan@geo.uib.no Subject: Re: [seisan] Problem compiling seisan explorer on linux Hi Brian, I don't have a full solution for your problem with compiling Seisan Explorer, just a bit of experience to share: I tried to compile SE with a QT version (5.12.9) installed in a conda environment, but I also failed trying it like that (don't remember if it was the same error). When I installed the whole QT framework, I was able to compile SE on Ubuntu 18.04 LTS. The whole QT framework download is more than 10 times larger than the one on conda, though I'm not sure if missing functions or library packages are really the reason the SE compilation fails. Download links for QT framework versions where one doesn't have to sign up are now available here: http://download.qt.io/archive/qt/5.12/5.12.9/ Cheers, Felix -- Felix Halpaap | Postdoctoral Research Fellow | Dep. of Earth Science | University of Bergen Allégaten 41, 5007 Bergen, Norway | felix.halp...@uib.no | +47 55 58 34 11 | Office 2B18c On 2020-10-14 13:37, Baptie, Brian J. wrote: > I wondered if anyone could help with a problem compiling seisan explorer on > Linux (Centos 6.10). > > I have qt (5.12.9) installed in a conda environment along with gcc and libgcc. > > Everything seems to compile but the linker produces a series of messages like > the following for all the seisan library modules. > > /users/seisoft/source/seisan/seisan11.0/LIB/sacsubf.for:1511: > relocation truncated to fit: R_X86_64_32S against symbol `sachdr_' > defined in COMMON section in > /users/seisoft/source/seisan/seisan11.0/SUP/se-source/linux/seisan.a(s > acsei_lib.o) > > The make fails with the error > > collect2: error: ld returned 1 exit status > make: *** [se] Error 1 > > I guess this is the result of missing symbols. It looks like the linker is > trying to push 64 bit addresses into 32 bit spaces, but I don't know how to > resolve this. > > Has anyone else a managed to successfully make seisan explorer in a conda > environment? > > Brian > > > Brian > > -----Original Message----- > From: Luckett, Richard R. > Sent: 12 October 2020 18:56 > To: Baptie, Brian J. <b...@bgs.ac.uk> > Subject: RE: seisan explorer > > HI Brian, > > If they install then that's fine. Be aware though that that is why I got a > centos 7 machine made up - libgcc only goes so high on the OS we have. So if > it starts really moaning then ask and I'll look out what I found out recently. > > Rich > > -----Original Message----- > From: Baptie, Brian J. <b...@bgs.ac.uk> > Sent: 12 October 2020 17:11 > To: Luckett, Richard R. <r...@bgs.ac.uk> > Subject: RE: seisan explorer > > Hi Rich, > > The make failed with the error > > ./database.h:13:40: error: QtConcurrent/QtConcurrentRun: No such file > or directory > > This function is part of Qt5, which isn't installed. I can install this in > the obspy environment. However, it will install a few new packages as well as > update others. Details below. Are you happy for me to do this? I can install > in a new environment if preferred. > > Brian > > > The following NEW packages will be INSTALLED: > > _libgcc_mutex: 0.1-conda_forge conda-forge > _openmp_mutex: 4.5-1_gnu conda-forge > libgcc-ng: 9.3.0-h5dbcf3e_17 conda-forge > libgomp: 9.3.0-h5dbcf3e_17 conda-forge > qt5: 5.3.1-1 dsdale24 > > The following packages will be UPDATED: > > ca-certificates: 2017.1.23-0 conda-forge --> 2020.6.20-hecda079_0 > conda-forge > certifi: 2017.1.23-py35_0 conda-forge --> 2018.8.24-py35_1001 > conda-forge > openssl: 1.0.2h-3 conda-forge --> 1.0.2u-h516909a_0 > conda-forge > > > > > From: Luckett, Richard R. > Sent: 12 October 2020 15:06 > To: Baptie, Brian J. <b...@bgs.ac.uk> > Subject: RE: seisan explorer > > Hi Brian, > > That should work but I thought all python 2 was gone now - can't it use qt5 > under python 3.6? > > The python to use on those boxes is the one you get by 'conda activate obspy' > as analyst. That would also be where any new version wound up. > I'm surprised that qt isn't there already. > > Rich. > > From: Baptie, Brian J. > Sent: 12 October 2020 14:24 > To: Luckett, Richard R. <mailto:r...@bgs.ac.uk> > Subject: seisan explorer > > Hi Rich, > > I've just started looking into seisan explorer on Linux. You need the Qt 5 > framework (https://www.qt.io/developers) to compile Seisan Explorer on a > Linux system. I've downloaded the open source version and need to compile > this, but it needs to have Python version 2.7. Our Linux boxes have Python > 2.6.6 as the system Python version. I don't really want to mess around > installing Python on individual machines so I'd prefer install a new version > of Python for the seisoft account using conda. I think I can also install Qt5 > from conda rather than compiling the source code. Do you see potential > problems with this? > > Brian > This email and any attachments are intended solely for the use of the named > recipients. If you are not the intended recipient you must not use, disclose, > copy or distribute this email or any of its attachments and should notify the > sender immediately and delete this email from your system. UK Research and > Innovation (UKRI) has taken every reasonable precaution to minimise risk of > this email or any attachments containing viruses or malware but the recipient > should carry out its own virus and malware checks before opening the > attachments. UKRI does not accept any liability for any losses or damages > which the recipient may sustain due to presence of any viruses. Opinions, > conclusions or other information in this message and attachments that are not > related directly to UKRI business are solely those of the author and do not > represent the views of UKRI. > > _______________________________________________ > seisan mailing list > seisan@geo.uib.no > https://mailman.uib.no/listinfo/seisan _______________________________________________ seisan mailing list seisan@geo.uib.no https://mailman.uib.no/listinfo/seisan _______________________________________________ seisan mailing list seisan@geo.uib.no https://mailman.uib.no/listinfo/seisan
