Hello all,

I am rather new to SIESTA, so please forgive me
for the naivety of this post. I have checked the archives and was
unable to locate a post that seemed to fit my problem. I am attempting
to use DENCHAR to visualize the wavefunctions of a relaxed silicon
nanowire (infinitely periodic along the z axis). Following the
instructions in the DENCHAR manual, I successfully compiled and ran the
program but immediately became confused when examining the output.
Using the relaxed coordinates to define the Min/Max x, y, and z
coordinates, I noticed that DENCHAR included more atoms in the
calculations that were included in my original supercell used to
generate the files required by DENCHAR. How can this be? If the extent
of my supercell along the axial direction is defined by the difference
between the top and bottom plane of atoms in from my SIESTA
calculations, how can maintaining this result in the inclusion of more
atoms in the DENCHAR calculations? Am I missing something? Will the
inclusion of these additional atoms adversely affect the generated
wavefunctions? 


Thank you very much for your time and I eagerly await your response.


Sincerly,

EJS 
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