You can also natively compile SIESTA under Windows (i.e. without cygwin) although you would have to recreate all the dependencies in the project (i.e. manually recreate what is written in the makefile).

I did this in Visual Studio with Intel Fortran, PGI now offers free Fortran with GUI for american students. But the program couldn't work with big systems (>15 atoms) due to problems with memory (maybe it could be solved by playing with compiler options).

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