Dear all,
using mpiexec solved the issue.
Thank you,
Éric.
On 08/07/2013 10:15 AM, Éric Germaneau wrote:
Thank you for your reply.
Well, the "NPUT_DEBUG.fdf" way does not work.
Yes, I do
mpirun -np 2 path/to/siesta <infile.fdf
Our job scheduler is LSF ...
On 08/07/2013 10:02 AM, Salvador Barraza-Lopez wrote:
I had the same issue on a mac cluster many years ago.
If I am correct, SIESTA will try to read a default file called
INPUT_DEBUG.fdf. So if you give your file with this name, you may be
able to run your calculations. You can grep this filename on the
source files (or a similar combination) to make sure it tres to load
it. It worked for me but again this was back in 2005 or so.
I imagine the SIESTA team could also give you more details.
[On a simpler note, are you trying to run with the command on your
e-mail, or rather with something like: mpirun -np 2 ./siesta
<infile.fdf ? perhaps siesta needs the fdf extension and mpi a number
of cores? Just some additional things for you to check.]
------------------------------------------------------------------------
*From:* [email protected] [[email protected]] on behalf
of Iván Pulido [[email protected]]
*Sent:* Tuesday, August 06, 2013 8:48 PM
*To:* [email protected]
*Subject:* Re: [SIESTA-L] mpirun issue
Is the "infile" available in the same route for all the machines in
the cluster? This is important.
On Tue, Aug 6, 2013 at 8:41 PM, Éric Germaneau <[email protected]
<mailto:[email protected]>> wrote:
Dear Siesta users,
I'm not familiar with Siesta, I'm just testing it for the user of
our cluster.
For some reasons we can not redirecting the input with mpirun on
our system.
For instance the command
mpirun siesta < infile
does not work, siesta will wait the input data for ever ...
I wonder whether there is an other way to input file.
I had a similar issue with an other application and fortunately
it was possible to use a "-in" option.
I did not find any of such possibility with siesta but I may be
wrong.
Well, in case the only way is to redirecting the input, does
anyone know how to handle this issue with mpirun?
I thank you in advance,
Regards,
Éric.
--
Éric Germaneau (???), Specialist
Center for High Performance Computing
Shanghai Jiao Tong University
Room 205 Network Center, 800 Dongchuan Road, Shanghai 200240 China
Email:[email protected] <mailto:Email:[email protected]>
Mobi:+86-136-4161-6480 <tel:%2B86-136-4161-6480>
http://hpc.sjtu.edu.cn
--
Iván José Pulido Sánchez
Estudiante de Física
Universidad Nacional de Colombia
--
Éric Germaneau (???), Specialist
Center for High Performance Computing
Shanghai Jiao Tong University
Room 205 Network Center, 800 Dongchuan Road, Shanghai 200240 China
Email:[email protected] Mobi:+86-136-4161-6480 http://hpc.sjtu.edu.cn
--
Éric Germaneau (???), Specialist
Center for High Performance Computing
Shanghai Jiao Tong University
Room 205 Network Center, 800 Dongchuan Road, Shanghai 200240 China
Email:[email protected] Mobi:+86-136-4161-6480 http://hpc.sjtu.edu.cn
