Dear Jon,

I have a working work-flow using BibDesk and my iPad to read papers. I use my 
extract script (http://www.sysecol.ethz.ch/people/afischli/software, script 
"Extract For e-Reading") to extract the current selection within BibDesk 
(incremental) and copy it in form of a html index and the associated pdf's to a 
cloud disk (I use MobileMe, but you could also use Dropbox).  See a public 
sample of the index created by my script here 
(http://www.sysecol2.ethz.ch/Refs/EntClim/).

On the iPad I use GoodReader and its sync facility to sync the cloud folder. It 
works very reliable in my experience. Once I completed reading a pdf I delete 
it using GoodReader's File managing function unless I have annotated the pdf. 
In the latter case I use another AppleScript to bring those pdf's back into my 
pdf repository on the Mac.

All pdf copying is quite efficient, since I do every extraction or syncing back 
incrementally.

I am happy with my workflow and I even have defined a shortcut for the 
extraction, since I regularly (several times per day) decide to read some other 
papers on my iPad.

However, there is one caveat: For a proper syncing you need the cite key be 
stored somehow in the pdf. Since I name pdf's <cite key>.pdf, <cite key>_S.pdf, 
<cite key>_S2.pdf etc. syncing is easy. If you should use pdf naming 
conventions that do not allow to deduce the cite key from the pdf's name, my 
workflow may be broken in the sense that I wouldn't know how to easily sync 
back annotated pdf's.

Regards,
Andreas

P.S.: I have not yet made available my script for syncing back at the 
aforementioned website.

ETH Zurich
Prof. Dr. Andreas Fischlin
Systems Ecology - Institute of Integrative Biology
CHN E 21.1
Universitaetstrasse 16
8092 Zurich
SWITZERLAND

[email protected]<mailto:[email protected]>
www.sysecol.ethz.ch<http://www.sysecol.ethz.ch>

+41 44 633-6090 phone
+41 44 633-1136 fax
+41 79 221-4657 mobile

             Make it as simple as possible, but distrust it!
________________________________________________________________________



On 02/Apr/2011, at 05:43 , Jon Keane wrote:

I'm trying to setup a workflow that integrates skim (and bibdesk) with
reading on the iPad. I've tried Papers and although it seems like it
might be slick – I've been disappointed so far. I've seen a few
conversations on this list discussing the ipad a few times, but I
haven't seen a description of the work flows that people use, and
which of these two readers is more compatible, or more preferred.

Could anybody share their current workflow for skim-ipad integration
using either GoodReader or iAnnotate or some other ipad app that I
don't know about? At this point I'm mostly concerned with the ipad app
being easily navigable and searchable, but annotations prowess is
important too. Thanks.

-Jon

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