Hi,
I just want to wrap this up in case someone has the same issue in the
future.
As Reed pointed out, Ubuntu 22 does not support cgroups v1 anymore. At
the same time, the slurm-wlm package in the Ubuntu repositories uses
cgroups v1, which makes its task/cgroup plugin incompatible with Ubuntu 22.
My solution was to build Slurm 22.05 manually, while ensuring that
/libdbus-1-dev/ is installed (as otherwise cgroups v2 support does not
get built). This takes a bit more time but seems to work so far.
Thanks a lot Reed & Abel for your advice!
Best,
Tim
On 6/16/23 10:42, Tim Schneider wrote:
Hi again,
I just realized that
https://groups.google.com/g/slurm-users/c/0dJhe5r6_2Q?pli=1 wrote at
some point that he build Slurm 22 instead of using the Ubuntu repo
version. So I guess I will have to look into that.
Best,
Tim
On 6/16/23 10:36, Tim Schneider wrote:
Hi Abel and Reed,
thanks a lot for your quick replies!
I did indeed just install slurm-wlm from the Ubuntu repos.
Following the advice of
https://groups.google.com/g/slurm-users/c/0dJhe5r6_2Q?pli=1, I tried
disabling cgroups v1 on Ubuntu, but that just leads to an error
during startup of slurmd:
/slurmd: debug3: Trying to load plugin
/usr/lib/x86_64-linux-gnu/slurm-wlm/proctrack_cgroup.so//
//slurmd: error: unable to mount freezer cgroup namespace: Invalid
argument//
//slurmd: error: unable to create freezer cgroup namespace//
//slurmd: error: Couldn't load specified plugin name for
proctrack/cgroup: Plugin init() callback failed//
//slurmd: error: cannot create proctrack context for proctrack/cgroup//
//slurmd: error: slurmd initialization failed/
So it seems that slurmd is using cgroups v1. This is also reflected
in the mounts (for the output below, cgroups v1 is enabled again):
/$ mount | grep cgroup//
//cgroup2 on /sys/fs/cgroup type cgroup2
(rw,nosuid,nodev,noexec,relatime,nsdelegate,memory_recursiveprot)//
//cgroup on /sys/fs/cgroup/freezer type cgroup
(rw,nosuid,nodev,noexec,relatime,freezer)/
What is still confusing to me is that the slurmd logs indicate no
error when I try running with cgroups v1 enabled and the error only
appears on the slurmctld side.
Do you know how I can enable cgroups v2 in Slurm? To me it seems that
this is what
https://groups.google.com/g/slurm-users/c/0dJhe5r6_2Q?pli=1 did.
Best,
Tim
On 6/16/23 03:28, abel pinto wrote:
Indeed, the issue seems to be that Ubuntu 22.04 does not support
cgroups v1 anymore. Does SLURM support cgroupsv2? It seems so:
https://slurm.schedmd.com/cgroup_v2.html
/Abel
On Jun 15, 2023, at 20:20, Reed Dier <reed.d...@focusvq.com> wrote:
I don’t have any direct advice off-hand, but I figure I will try
to help steer the conversation in the right direction for figuring
it out.
I’m going to assume that since you mention 21.08.5, that this means
you are using the slurm-wlm packages from the ubuntu repos, and not
building yourself?
And have all the components (slurmctld(s), slurmdbd, slurmd(s))
been upgraded as well?
The only thing that immediately comes to mind is that I remember
reading a good bit about Ubuntu 22.04’s use of cgroups v2, which as
I understand it are very different from cgroups v1, and plenty of
people have had issues with v1/v2 mismatches with slurm and other
applications.
https://www.reddit.com/r/SLURM/comments/vjquih/error_cannot_find_cgroup_plugin_for_cgroupv2/
https://groups.google.com/g/slurm-users/c/0dJhe5r6_2Q?pli=1
https://discuss.linuxcontainers.org/t/after-updated-to-more-recent-ubuntu-version-with-cgroups-v2-ubuntu-16-04-container-is-not-working-properly/14022
Hope that at least steers the conversation in a good direction.
Reed
On Jun 15, 2023, at 5:04 PM, Tim Schneider
<tim.schneid...@tu-darmstadt.de> wrote:
Hi,
I am maintaining the SLURM cluster of my research group. Recently
I updated to Ubuntu 22.04 and Slurm 21.08.5 and ever since, I am
unable to launch jobs. When launching a job, I receive the
following error:
/$ srun --nodes=1 --ntasks-per-node=1 -c 1 --mem-per-cpu 1G
--time=01:00:00 --pty -p amd -w cn02 --pty bash -i//
//srun: error: task 0 launch failed: Plugin initialization failed/
Strangely, I cannot find any indication of this problem in the
logs (find the logs attached). The problem must be related to the
task/cgroup plugin, as it does not occur when I disable it.
After reading in the documentation, I tried adding the
/cgroup_enable=memory swapaccount=1/ kernel parameters, but the
problem persisted.
I would be very grateful for any advice where to look since I have
no idea how to investigate this issue further.
Thanks a lot in advance.
Best,
Tim
<cgroup.conf><slurmd.log><slurmctld.log>
