Hi all,

I have installed the TPP 4.0.2 under WinXP. It goes on well all the
time. But now I encounter an obstacle when running ProteinProphet.
There are no results when running the ProteinProphet, although
everything runs successfully until this stage. Here are the results:


# Commands for session ETDOEPXN9 on Wed Oct 15 11:22:49 2008
# BEGIN COMMAND BLOCK
###### BEGIN Command Execution ######
[Wed Oct 15 11:22:49 2008] EXECUTING: ProteinProphet c:/Inetpub/
wwwroot/ISB/data/BW/interact.pep.xml c:/Inetpub/wwwroot/ISB/data/BW/
interact.prot.xml
OUTPUT:
ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the
original Perl by A. Keller (TPP v4.0 JETSTREAM rev 2, Build
200807011544 (MinGW))
 (xml input) (using degen pep info)
. . . reading in c:/Inetpub/wwwroot/ISB/data/BW/interact.pep.xml. . .
. . . read in 0 1+, 0 2+, 0 3+, 0 4+, 0 5+ spectra with min prob 0.05
no data - quittingEND OUTPUT
RETURN CODE:256
###### End Command Execution ######
# All finished at Wed Oct 15 11:22:50 2008
# END COMMAND BLOCK


I have redone it for twice, but the results are the same. What's the
problems?

Thanks!

John

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