Hi Angel, I have setup some proteomics tools running on parallel on a Linux cluster here at the Beckman Research Institute of City of Hope Medical Centre. I am not sure what you are looking for exactly: student, postdocs, collaboration or consultation. But if there is anything I can do to help, I'd be glad to.
Kossi Lekpor -----Original Message----- From: spctools-discuss@googlegroups.com [mailto:spctools-disc...@googlegroups.com] On Behalf Of Brian Pratt Sent: Wednesday, April 15, 2009 3:47 PM To: spctools-discuss@googlegroups.com Subject: [spctools-discuss] Re: Interested in cloud computing models [I'd sent the following to Angel, repeating for the list since we've opened up the thread] ------------------ Hi Angel, Insilicos has a couple of grants involving cloud computing with TPP and CPAS. We've been working in the context of Amazon Web Services. Haven't really gone after the parallelization yet, mostly been working on ubiquitous handling of compressed file formats so far. Let me know if I can help at all. Brian Pratt ------------------ Re-reading that, it's a bit vague: specifically we're making things like .mzML.gz work as seamlessly as .mzML for input and output, the idea being that bandwidth and storage costs are two things you'd like to minimize on the cloud. Code and build scripts for TPP on Amazon EC2 can be found in the TPP SVN repository. - Brian -----Original Message----- From: spctools-discuss@googlegroups.com [mailto:spctools-disc...@googlegroups.com] On Behalf Of Christopher Mason Sent: Wednesday, April 15, 2009 1:33 PM To: spctools-discuss@googlegroups.com Subject: [spctools-discuss] Re: Interested in cloud computing models Hi Angel, Distribution of omics data analysis is an interest of mine as well. I'm not sure what you're looking for here: are you seeking students? Or are you just gathering info about cloud computing? Two projects I've been involved with that involve distributed processing for proteomics: one, Swift, a protein ID system I designed and helped develop at Mayo, used grid engine to distribute processing and search tasks on a cluster. http://www.asms.org/asms08pdf/A082943.0750VER.1.pdf In addition, at my current employer, Proteome Software, I'm developing a new product for QC of LCMS data; one model involves us hosting it at Amazon Web Services. We're interested to see whether folks are willing to buy it that way. Let me know if I can help in any way. -c Angel wrote: > Hi all, > > Sorry for the cross-post spam, but a long standing interest of mine > has been distributed and parallel compute models for omics data. > > I you are a programmer that has interest in pursuing this area, email > me (angel _at_ upenn.edu ) as I am putting together proposals for > funding these types of positions. > > -angel > -- Christopher Mason Proteome Software (503) 244-6027 --------------------------------------------------------------------- SECURITY/CONFIDENTIALITY WARNING: This message and any attachments are intended solely for the individual or entity to which they are addressed. This communication may contain information that is privileged, confidential, or exempt from disclosure under applicable law (e.g., personal health information, research data, financial information). Because this e-mail has been sent without encryption, individuals other than the intended recipient may be able to view the information, forward it to others or tamper with the information without the knowledge or consent of the sender. If you are not the intended recipient, or the employee or person responsible for delivering the message to the intended recipient, any dissemination, distribution or copying of the communication is strictly prohibited. If you received the communication in error, please notify the sender immediately by replying to this message and deleting the message and any accompanying files from your system. If, due to the security risks, you do not wish to receive further communications via e-mail, please reply to this message and inform the sender that you do not wish to receive further e-mail from the sender. --------------------------------------------------------------------- --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
