That logic is part of the Petunia perl script (as opposed to something called from the script).
-----Original Message----- From: spctools-discuss@googlegroups.com [mailto:spctools-disc...@googlegroups.com] On Behalf Of Ben Collins Sent: Friday, April 24, 2009 8:11 AM To: spctools-discuss Subject: [spctools-discuss] Xtandem from command line? Hi, I'm trying to migrate some of my TPP work from petunia to command line. Usually I can figure the appropriate commands by looking at the output in petunia but for Xtandem if I want to search a file called sample.mzXML the following is printed in the output: run_in c:/Inetpub/wwwroot/ISB/data; tandem c:/Inetpub/wwwroot/ISB/data/ sample.tandem.params So what's generating the sample.tandem.params file, and how do I call this from the command line? Thanks, Ben --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
