hello, i moved my data-folder to another drive and changed the settings for the server root folder in tpp_gui.pl as well as in apache httpd.conf according to
http://tools.proteomecenter.org/wiki/index.php?title=TPP:Using_Petunia#How_to_change_the_location_of_the_data_files i can access the files in the new location and perform a database search with them. however, when i try running a peptide analysis with them i get several error messages regarding the new location and the command is not finished. instead pepxmlviewer.cgi runs at 100% cpu usage and seems not to come to an end. Is there any other file i need to edit except from tpp_gui.pl and httpd.conf? please also see below the output of the task with the error messages. Thank you for your help! best regards, Johannes =============================== # Commands for session 0F2NBY3WV on Tue Aug 11 14:41:29 2009 # BEGIN COMMAND BLOCK ###### BEGIN Command Execution ###### [Tue Aug 11 14:41:30 2009] EXECUTING: run_in G:/Daten/ESI/JZ/J090716/ Z11.D; c:\Inetpub\tpp-bin\xinteract -NZ11.pep.xml -p0.05 -l7 -Op -X- m0.2-nK,6-nR,10 -A-lRK-F-r0.2-mR166.11K134.11 G:/Daten/ESI/JZ/J090716/ Z11.D/Z11.tandem.pep.xml OUTPUT: c:\Inetpub\tpp-bin\xinteract (TPP v4.3 JETSTREAM rev 0, Build 200908071234 (MinGW)) running: "C:/Inetpub/tpp-bin/InteractParser "Z11.pep.xml" "G:/Daten/ ESI/JZ/J090716/Z11.D/Z11.tandem.pep.xml" -L"7"" warning: xsl file g:/daten/esi/jz/j090716/Z11.D/Z11.pep.xsl must begin with the WEBSERVER_ROOT path for use with a webserver. file 1: G:/Daten/ESI/JZ/J090716/Z11.D/Z11.tandem.pep.xml processed altogether 293 results problem (ph8): g:/Daten/ESI/JZ/J090716/Z11.D/Z11.pep.xml is not mounted under webserver root: c:/Inetpub/wwwroot/ command completed in 0 sec running: "C:/Inetpub/tpp-bin/PeptideProphetParser "Z11.pep.xml" MINPROB=0.05" (X! Tandem) init with X! Tandem trypsin MS Instrument info: Manufacturer: Bruker Daltonics, Model: esquire, Ionization: ESI, Analyzer: Quadrupole Ion Trap, Detector: PeptideProphet (TPP v4.3 JETSTREAM rev 0, Build 200908071234 (MinGW)) akel...@isb read in 0 1+, 190 2+, 102 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra. Initialising statistical models ... negmean = 0.0533258 negmean = 1 negmean = -0.2 negmean = -0.2 negmean = -0.2 negmean = -0.2 negmean = -0.2 Iterations: .........10.........20. WARNING: Mixture model quality test failed for charge (2+). WARNING: Mixture model quality test failed for charge (3+). model complete after 22 iterations command completed in 0 sec running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i Z11.pep.xml" Analyzing Z11.pep.xml ... Parsing search results "G:/Daten/ESI/JZ/J090716/Z11.D/Z11 (X! Tandem)"... => Total of 0 hits. command completed in 1 sec running: "C:/Inetpub/tpp-bin/XPressPeptideParser "Z11.pep.xml" -m0.2 - nK,6 -nR,10" command completed in 1 sec running: "C:/Inetpub/tpp-bin/ASAPRatioPeptideParser "Z11.pep.xml" -lRK -F -r0.2 -mR166.11K134.11" WARNING: Found more than one variable mod on 'K'. Please make sure to specify a heavy mass for this residue. WARNING: Found more than one variable mod on 'R'. Please make sure to specify a heavy mass for this residue. command completed in 1 sec running: "C:/Inetpub/tpp-bin/DatabaseParser "Z11.pep.xml"" command completed in 0 sec running: "C:/Inetpub/tpp-bin/RefreshParser "Z11.pep.xml" "G:/Daten/ESI/ data/dbase/IPI/current/ipi.HUMAN.v3.62.fasta"" - Searching the tree... - Linking duplicate entries... - Printing results... - Building Commentz-Walter keyword tree...command completed in 4 sec running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I g:/Daten/ ESI/JZ/J090716/Z11.D/Z11.pep.xml" =============================== --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
