It may have, I'm not sure. I'd never seen this behavior previously. And actually, I filed a bug on it, as I think $PWD shouldn't be gratuitously removed. So far I'm not getting much traction convincing anyone else of that, though.
Mike On Aug 13, 3:24 pm, Natalie Tasman <natalie.tas...@insilicos.com> wrote: > Hi Mike, > > That's a strange report about Ubuntu. I'm routinely building on 8.04 > and 9.04. Did something change in 9.10? > > -Natalie > > On Aug 13, 2009, at 1:09 PM, Mike Coleman wrote: > > > > > [sorry about the previous half-finished post] > > > I can speak to that, having just bumped into it. SRC_ROOT is defined > > as $(PWD)/ in the Makefile, but $PWD may not exist in the environment, > > leading to a definition of "SRC_ROOT=/". > > > In particular, on the latest version of Ubuntu, 'sudo printenv' shows > > no definition of PWD. I'm not that crazy about them having left it > > out, but there it is, and there's really no standard that says it has > > to be defined. > > > For GNU make, you could use one of > > > $(realpath .) > > $(abspath .) > > $(shell pwd) > > > The best solution, though, would be to get rid of SRC_ROOT altogether > > and use relative paths, if possible. > > > Mike > > > On Aug 13, 11:51 am, "Brian Pratt" <brian.pr...@insilicos.com> wrote: > >> Natalie is correct, the issue is around SRC_ROOT="/" . > > >> As she says, your current working directory needs to be the one that > >> contains the main TPP makefile (and the Makefile.pwiz.incl file). > > >> -----Original Message----- > >> From: spctools-discuss@googlegroups.com > > >> [mailto:spctools-disc...@googlegroups.com] On Behalf Of Eliza > >> Sent: Thursday, August 13, 2009 7:46 AM > >> To: spctools-discuss > >> Subject: [spctools-discuss] Re: Failure with make > > >> I got the latest version of TPP (4.3.0) and this time when trying to > >> make I am getting the following error: > > >> Makefile.incl:431: /Makefile.pwiz.incl: No such file or directory > >> make: *** No rule to make target `/Makefile.pwiz.incl'. Stop. > > >> On Aug 5, 10:25 pm, Natalie Tasman <natalie.tas...@insilicos.com> > >> wrote: > >>> Hi Eliza, > > >>> It sounds like something strange is going on. Maybe you should re- > >>> load the sourcecode. Also, I've never seen "SRC_ROOT="/"" come up > >>> before. Are you starting the build from /, rather than the actual > >>> TPP/ > >>> src directory? You want to cd there first. > > >>> It does sound like a corrupted checkout (missing files, etc), too, > >>> possibly. > > >>> Natalie > > >>> On Aug 5, 2009, at 1:29 AM, Eliza wrote: > > >>>> Hi Natalie, > > >>>> I have tried your suggestion and 'make distclean; make" fails at: > > >>>> make -C ../extern/xtandem/src SRC_ROOT="/" ARCH=linux > >>>> BUILD_DIR=/../ > >>>> build/linux clean > >>>> make[1]: Entering directory `/usr/local/src/tpp-4.2.1/extern/ > >>>> xtandem/ > >>>> src' > >>>> make[1]: *** No rule to make target `clean'. Stop. > > >>>> Thanks, > >>>> Eliza. > > >>>> On Jul 31, 8:19 pm, Natalie Tasman <natalie.tas...@insilicos.com> > >>>> wrote: > >>>>> Hi Eliza, > > >>>>> I haven't run into this before, but you may want to try a "make > >>>>> distclean; make" sequence. I would also look at the compiler > >>>>> output > >>>>> earlier in the stream and see if there were any uncaught errors > >>>>> building the "AminoAcid" that might provide a clue. > > >>>>> Please let us know how it goes, and good luck, > > >>>>> Natalie > > >>>>> On Jul 31, 2009, at 4:25 AM, Eliza wrote: > > >>>>>> Hi, > > >>>>>> I am receiving the following error when trying to issue 'make' in > >>>>>> the > >>>>>> src directory: > > >>>>>> make[1]: *** No rule to make target `/../build/linux/ > >>>>>> AminoAcid.o', > >>>>>> needed by `/../build/linux/libpwiz.a'. Stop. > >>>>>> make[1]: Leaving directory `/usr/local/src/tpp-4.2.1/src' > >>>>>> make: *** [default] Error 2 > > >>>>>> TPP version 4.2.1 > >>>>>> Debian Etch kernel 2.6.15.4 > >>>>>> Compiler version 4.3.2 > > >>>>>> Thanks, > >>>>>> Eliza. --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To post to this group, send email to spctools-discuss@googlegroups.com To unsubscribe from this group, send email to spctools-discuss+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/spctools-discuss?hl=en -~----------~----~----~----~------~----~------~--~---
