Sorry to reply to my own post but I just wanted to expand and clarify.
At the end of the day I would like to know the number of Unique, shared, 
and total spectral counts for each protein hit. Is there a way to get these 
data all together? Thanks again. 

On Wednesday, February 19, 2014 12:28:02 PM UTC-7, Robert Jones wrote:
>
> Hello again all,
>
> I was hoping someone might be able to clarify exactly how the data in the 
> proteinprophet column titled "total indep spectra" which I take to mean 
> total independent spectra is arrived at. I'm preferably looking for a 
> strict definition and any formulas involved. My assumption is that it is 
> synonymous with unique spectra but I realize that the wording does leave a 
> little room for interpretation. Thanks so much for your help everyone!
>
> Best,
>
> Robert M Jones 
>

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