Hi Kate,

The Apache timeout should not matter if you run in from the command line. 
Are the file names very long? You may have an 8192-character limit on the 
entire command...


Cheers,

Magnus

On Friday, 14 March 2014 16:52:40 UTC+1, Kate Mostovenko wrote:
>
> Hi all,
>
> Maybe somebody had a similar problem, I tried to research the group for it 
> but couldn't find the solution. I have 93 pep.xml files (result of X!Tandem 
> search) and I try to run xinteract via command line. Unfortunately, the 
> process gets terminated on the stage of InteractParser with the error:
>
> This application has requested the Runtime to terminate it in an unusual 
> way.
> Please contact the application's support team for more information.
>
> When I split the data in two parts of 36 and 57 files, xinteract works 
> totally fine on both subsets, saying that files are not corrupted or there 
> is nothing wrong with them. It doesn't matter what order the files go (I 
> did reorder them) it seems that it is not going any further than 74 files.
>
> Did anyone encounter similar problem and maybe knows how to deal with it?
>
> I have a latest version (4.7) of TPP and increased to 24h timeout in 
> Apache.
>
> Thank you,
>
> Kate
>

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