This command-line is used for exporting default information (peptide sequence and protein infromation, etc) of pepxml into a excel file, and how to export other infromation (such as Z, missed cleavage sites, etc) into a excel file?
On Fri, Aug 15, 2014 at 5:19 PM, 钟传奇 <andy...@gmail.com> wrote: > Luis, Thanks. > It works. > > > On Fri, Aug 15, 2014 at 5:49 AM, Luis Mendoza < > luis.mend...@systemsbiology.org> wrote: > >> Hello, >> There is an obscure option (as in: I just discovered it!) that might >> work. Try running the PepXMLViewer from the command-line like so: >> >> PepXMLViewer.cgi -B exportSpreadsheet 1 -I <pepXMLfile> >> >> Hope this helps, >> --Luis >> >> >> >> On Tue, Aug 12, 2014 at 4:49 AM, 钟传奇 <andy...@gmail.com> wrote: >> >>> I have the same question. >>> Hope someone can help. >>> >>> >>> On Tue, Aug 12, 2014 at 5:12 AM, Adam Oberstein < >>> adam.oberst...@gmail.com> wrote: >>> >>>> Dear TPP team, >>>> >>>> I'm trying to automate my data analysis workflow using the binaries >>>> included with tpp v4.7.1 on linux. I have database search --> peptide >>>> prophet --> iprophet working. I'd like to export the iprot.pep.xml data to >>>> a spreadsheet file (.xls), as one would do manually in PepXMLViewer using >>>> the "Other Actions --> Export Spreadsheet" option. >>>> >>>> Can someone advise me how I might go about doing this from the command >>>> line or a script? >>>> >>>> Sincerely, >>>> Adam Oberstein >>>> Department of Molecular Biology >>>> Princeton University >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to spctools-discuss+unsubscr...@googlegroups.com. >>>> To post to this group, send email to spctools-discuss@googlegroups.com. >>>> Visit this group at http://groups.google.com/group/spctools-discuss. >>>> For more options, visit https://groups.google.com/d/optout. >>>> >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to spctools-discuss+unsubscr...@googlegroups.com. >>> To post to this group, send email to spctools-discuss@googlegroups.com. >>> Visit this group at http://groups.google.com/group/spctools-discuss. >>> For more options, visit https://groups.google.com/d/optout. >>> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to spctools-discuss+unsubscr...@googlegroups.com. >> To post to this group, send email to spctools-discuss@googlegroups.com. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
