Hi, ChargedPeptide, Did you have a solution to the problem you described in this post? I came across the same problem, and would be much appreciated if you can share your experiences with me.
Sun On Tuesday, November 10, 2009 9:11:45 PM UTC+8, ChargedPeptide wrote: > > Hi guys, I'm running a couple of searches with an un-annotated > datbase. > As such I would like to take the results from the prot.xml file and > run a blastP search with the sequences against an annotated related > databases. > Is there any easy way to export fasta sequences of a search together > with their protein ID? I've only come up with a very roundabout way > using excel and a couple of other utilities which is very labour > intensive. > If there is any third party prot.xml parsing utility or such that > anyone on this board is using that would be very much appreciated. > Even just exporting a list of protein IDs that does not, like now, use > several IDs per line would be useful. > > Any hints from the community? Hoping I'm just being thick here... -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
