Dear Brian, I'm a postdoc in Ruedi Aeberold's group. I have the exact same problem as posted by Andreas in 2009. Here is the error message I get when I run xinteract from comet search results: *unable to read pepxml file: error parsing pepxml file: XML parsing error: mismatched tag, at xml file line 10931001, column 2*
Do you know how I can fix this problem? Thanks in advance for your help. Best regards, Etienne On Friday, July 10, 2009 4:25:05 PM UTC+2, Brian Pratt wrote: > > Perhaps you could upload the .dat file to ftp://insilicos.serveftp.net/pub > and I can investigate. Zip it up with the database you used, and the > mzXML > file (so, everything needed to run xinteract). > > Brian > > -----Original Message----- > From: spctools...@googlegroups.com <javascript:> > [mailto:spctools...@googlegroups.com <javascript:>] On Behalf Of andreas > quandt > Sent: Friday, July 10, 2009 12:52 AM > To: spctools...@googlegroups.com <javascript:> > Subject: [spctools-discuss] Re: parsing error for pepXML from mascot > result > > > hey brian, > > its 4.2.1 in that case ;-) > > > Brian Pratt wrote: > > What version of the software are you using? > > > > Brian > > > > -----Original Message----- > > From: spctools...@googlegroups.com <javascript:> > > [mailto:spctools...@googlegroups.com <javascript:>] On Behalf Of > andreas quandt > > Sent: Thursday, July 09, 2009 5:50 AM > > To: spctools...@googlegroups.com <javascript:> > > Subject: [spctools-discuss] parsing error for pepXML from mascot result > > > > > > dear list, > > > > i analyzed a few samples with mascot and converted the dat file > > successfully to pepXML (only error: scan number cannot be found). > > afterwards i was running xinteract on all created pep.xml files > > (arguments: l -dDECOY_ -OAlIwp). > > this was also successful but when i want to display the results, i get > > an error message: > > > > unable to read pepxml file: error parsing pepxml file: XML parsing > > error: mismatched tag, at xml file line 1048198, column 2 > > > > when looking at the file, the line contains following tag: > </search_hit>. > > the same happens when using iprophet. here the error message is the same > > and when jumping to the indicated line, the same tag appears. > > > > does anyone of you know what's going wrong and/or know how to fix this? > > > > many thanks in advance, > > andreas > > > > > > > > > > > > > > > > > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
