Dear TPP team, I used MAYU for filtering protein identification. When I perform MAYU on iprophet result, it shows that the IP/PPs is jumping for 0.99914 to 0.6976 (number in red), which seems not normal; The MAYU for peptideprophet result shows more reasonable (number in blue, no big jump for the IP/PPs); what could be the reason for this big difference? can I use MAYU on peptideprophet results? Thanks.
mFDR IP/PPs TP_protID 0 *0.99914* 2484 0.001 *0.697643* 6770 0.002 0.504006 7085 0.003 0.389325 7259 0.004 0.289737 7430 0.005 0.236973 7472 0.006 0.197837 7509 0.007 0.162701 7578 0.008 0.135955 7630 0.009 0.11707 7677 0.01 0.098871 7750 mFDR IP/PPs TP_protID 0 *0.9997* 1747 0.001 *0.9728* 6615 0.002 0.949 6900 0.003 0.9245 7094 0.004 0.8969 7235 0.005 0.8642 7341 0.006 0.8347 7374 0.007 0.8077 7403 0.008 0.7719 7461 0.009 0.7316 7539 0.01 0.6991 7580 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
